Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccus_20marginatus_20[genbank_20GCA_5F900065295.1_202016-03-26] 60,102 sequences; 191,208,351 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq27620 118 1e-21 seq39349 95.1 1e-14 >seq27620 Length=20860 Score = 118 bits (130), Expect = 1e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 23545 ATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATT 23604 |||| ||||||| || || | ||| ||||||| |||| ||||||| ||| ||||| Sbjct 18266 ATCAGTTCATTACTGAAAGTCAGTCCAGGCATTAGGCCTCTCTTTTTAAGCCAGAATATC 18207 Query 23605 GCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTA 23664 |||||||| |||||||||||||||||| || || || ||||| || | | ||| | Sbjct 18206 GCAGCAAAGCTTCCGGAAAAGAAAATACCTTCGACGGCAGCAAACGCAATGACCCGTTCA 18147 Query 23665 CCAAATGTTGCATTATAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACA 23724 |||| || || | | ||||| |||||||| | ||| | || ||| |||||| Sbjct 18146 GCAAAAGTAGCGCTTTGATCAGCTATCCATTTCAACGCCCAGTCCGCTTTCTTCTTTACA 18087 Query 23725 CACTCAATTGTTTCAATTGCTTTTAAGAGAAAA 23757 || ||||||||||| || || || |||||| Sbjct 18086 CAAGGCATTGTTTCAATGGCATTGAACAGAAAA 18054 Score = 93.3 bits (102), Expect = 4e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 23782 TATGTATCAATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAAC 23841 || || || || | ||| || ||||| || ||||| | |||||| || | || ||||| Sbjct 17966 TAGGTGTCTATCAATAAGCTGTACATCTCGGAATGTACATTTTCTATGGTGATTTGAAAT 17907 Query 23842 CCATAAAAACATCTAGCTTCAGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTT 23901 || ||||| |||| ||||| | | |||||| || | ||| || | | |||||||| Sbjct 17906 CCGTAAAAGAATCTGGCTTCTGGAATTTGAACTTCTTGAAAGAAACGCTCGACTAAATTT 17847 Query 23902 TCGTTAACAATACCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTT 23961 || || |||||||||||| || ||||| || || | ||| | | || || | | || Sbjct 17846 TCATTGACAATACCATCAGATGCCGCAAAAAATGCTAAAACGTGTGAAATGAATTTTTTT 17787 Query 23962 TCATCAGTTGATAATTTTTTCCAATC 23987 || || | | | ||||| |||||| Sbjct 17786 TCTTCGGGTTTCAGTTTTTGCCAATC 17761 >seq39349 Length=17693 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23531 CTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTT 23590 |||| || ||| || ||||| ||| || || | || ||||||| || | ||||| Sbjct 11662 CTTCGTCTCTAGATATTAATTCGTTACTGAAAGTCAGACCAGGCATTAGGCCCCTTTTTT 11603 Query 23591 TAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGG 23650 ||| ||||||||| || ||||| ||| ||||||||||| || || ||||| ||||| | Sbjct 11602 TAAGCCAAAATATAGCCGCAAAACTTCCAGAAAAGAAAATCCCTTCGACAGCAGCAAACG 11543 Query 23651 CCACAAGACGTGTACCAAATGTTGCATTATAATCAGAAATCCAtttttttGTCCAATTAG 23710 | | | | ||||| || || || | ||| | |||||| || | ||| | | Sbjct 11542 CAATGATTCTCTCTCCAAAAGTCGCGTTCTGATCCGCTATCCATCTTAACGCCCAGTCTG 11483 Query 23711 CCTTCAATTTTACACACTCAATTGTTTCAATTGCTTTTAAGAGAAAA 23757 | || ||| ||||| || ||||||||||| || || |||||| Sbjct 11482 CTTTTCTTTTGACACAAGGCATGGTTTCAATTGCATTAAATAGAAAA 11436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521096219102800