Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccus_20marginatus_20[genbank_20GCA_5F900065295.1_202016-03-26] 60,102 sequences; 191,208,351 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq48073 116 3e-21 seq37708 89.7 4e-13 >seq48073 Length=7537 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 44126 AACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCG 44185 || |||| ||||| || ||| ||||| |||||||||||| || || |||| Sbjct 6952 AAAACCAAATGAAGGGTCGACTCTTTTTGAATGTTGTAATCGCTCAGAGTACGACCGTCT 6893 Query 44186 TCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCC 44245 |||| ||| || || ||||||||||| |||||||| || | || | ||||| || ||| Sbjct 6892 TCCAACTGTTTACCAGCAAAGATCAATCGCTGCTGGTCAGGCGGGATTCCTTCTTTATCC 6833 Query 44246 GTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305 || || ||||| || | || || |||| | ||| ||||||| |||||||||| Sbjct 6832 TGAATTTTGGCCTTCACGTTTTCGATAGTATCGGACGGTTCTACCTCCAGCGTAATCGTC 6773 Query 44306 TTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| || | || || ||||| |||||||| Sbjct 6772 TTTCCGGTCAAAGTTTTAACGAAAATTTGCAT 6741 Score = 100 bits (110), Expect = 2e-16 Identities = 168/237 (71%), Gaps = 6/237 (3%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| || | | || | ||||| |||||||| || || || ||||| || Sbjct 5834 TTGCATTCCACCACGTAACCTGAGCACCAAATGAAGCGTAGATTCTTTCTGAATGTTATA 5775 Query 44164 ATCGGCGA--GTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGA 44221 |||| | ||| | || |||| |||| ||||||||||| |||||||| | || || Sbjct 5774 ATCGCTCAAAGTTCG-GC-CGTCTTCCAATTGCTTCCCGGCGAAGATCAATCTTTGTTGG 5717 Query 44222 TCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGC 44280 || | || | |||||||| ||| ||||| |||| || |||| | ||||| |||| Sbjct 5716 TCGGGTGGGATGCCTTCCTTGTCCTGAATCTT-AGCTTTAACGTTCTCGATGGTATCGGA 5658 Query 44281 GGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || || |||| |||||| || || || || | ||||| ||||| |||||||| Sbjct 5657 CGGCTCTACTTCCAACGTAATGGTTTTACCGGTTAACGTCTTGACGAAAATTTGCAT 5601 Score = 82.4 bits (90), Expect = 5e-11 Identities = 163/237 (69%), Gaps = 6/237 (3%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| |||| || | ||| || | |||||| || ||| ||||| |||||||| Sbjct 6518 TTGCATTCCACCTCGGAGACGCAAGACTAAGTGAAGGGTTGACTCTTTTTGAATGTTGTA 6459 Query 44164 ATCG--GCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGA 44221 |||| |||| || |||| |||| ||| || ||||| || || || |||||||| Sbjct 6458 ATCGCTCAAAGTT--CGGCCGTCTTCCAACTGTTTTCCGGCGAAAATTAACCGCTGCTGG 6401 Query 44222 TCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATG-TTCCTATGGTGTCGGC 44280 || | || | ||||| || ||| | | || |||| | | || | || || || | Sbjct 6400 TCGGGTGGAATGCCTTCTTTATCC-TGAATTTTAGCTTTGACGTTTTCAATCGTATCAGA 6342 Query 44281 GGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||| || |||| ||||| || || || || | || || || || |||||||| Sbjct 6341 CGGTTCTACTTCCAGGGTAATGGTTTTACCGGTTAACGTTTTAACAAAAATTTGCAT 6285 >seq37708 Length=8338 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || || |||| || | ||||| || | || ||| |||||||||||||| Sbjct 4180 TTGCATACCTCCCCTCAATCGAAGCACCAAATGTAAAGTCGACTCTTTTTGGATGTTGTA 4239 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||||| ||| | |||| |||| || || ||||| || || | ||| ||||| || Sbjct 4240 ATCGGAGAGCGTTCTACCGTCTTCCAATTGTTTACCGGCGAAAATGAGACGTTGCTGGTC 4299 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283 | ||| | || || || || || || ||| | || | ||||||||| | Sbjct 4300 GGGAGGAATTCCCTCTTTATCTTGAATTTTAGCCTTTACATTTTCGATGGTGTCGCTAGG 4359 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || | |||||||| || || || | ||| ||||||||||||||||| Sbjct 4360 CTCAACTTCGAGGGTAATCGTTTTGCCGGTCAAGGTTTTCACGAAGATTTGCAT 4413 Score = 87.8 bits (96), Expect = 1e-12 Identities = 162/236 (69%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || ||||| | || | |||| |||||| || || |||||||||||||| Sbjct 4408 TTGCATACCGCCTCTTAATCGGAGAACCAAGTGAAGGGTTGATTCTTTTTGGATGTTGTA 4467 Query 44164 ATCGGCGAGTTGGCGCT--CGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGA 44221 ||| ||| || || | || || ||||| || ||||| ||||| | ||| |||||| Sbjct 4468 ATC--CGAAAGGGTTCTACCATCTTCGAGCTGTTTACCGGCGAAGATGAGACGTTGCTGA 4525 Query 44222 TCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCG 44281 || | || | |||||||| || || ||| ||| | || | || ||||| Sbjct 4526 TCGGGCGGAATGCCTTCCTTATCTTGAATTTTCGCCTTGACATTTTCAATCGTGTCACTA 4585 Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || || |||| || || ||||| || || | |||||| ||||| || ||||| Sbjct 4586 GGCTCGACTTCCAATGTGATAGTCTTACCAGTCAAGGTCTTGACGAATATCTGCAT 4641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359726709506934