Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paracoccus_20marginatus_20[genbank_20GCA_5F900065295.1_202016-03-26] 60,102 sequences; 191,208,351 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq48073 107 2e-18 seq37708 102 8e-17 >seq48073 Length=7537 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712 ||||| ||| ||||| || |||||||||||||| ||| | || || |||| || Sbjct 5810 CACCAAATGAAGCGTAGATTCTTTCTGAATGTTATAATCGCTCAAAGTTCGGCCGTCTTC 5751 Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCAT 41772 | ||||| |||||||| |||| | |||||||| | || | || ||||||||| | Sbjct 5750 CAATTGCTTCCCGGCGAAGATCAATCTTTGTTGGTCGGGTGGGATGCCTTCCTTGTCC-T 5692 Query 41773 GATTTTTTGCTTCAACG-ACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTT 41831 || | || |||| |||| | | || ||| || ||| || |||| ||| || |||| Sbjct 5691 GAATCTTAGCTTTAACGTTCTCGATGGTATCGGACGGCTCTACTTCCAACGTAATGGTTT 5632 Query 41832 TACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || | |||||| |||||||| ||||| Sbjct 5631 TACCGGTTAACGTCTTGACGAAAATTTGCAT 5601 >seq37708 Length=8338 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || || |||| |||| ||| |||||| ||||| ||||| || || Sbjct 3275 CCACCACGAAGTCGCAATACCAAGTGCAACGTAGACTCCTTTTGAATATTATAATCCGAA 3334 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || | | || ||||||||||| |||||||| || || || || || |||| || Sbjct 3335 AGCGTTCTACCATCTTCGAGCTGCTTTCCGGCGAAAATTAGACGTTGCTGATCCGGAGGG 3394 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | || |||| | || |||| || | |||| | | || ||||| | ||| || Sbjct 3395 ATACCTTCTTTGT-CTTGGATTTTCGCCTTAACGTTTTCGATCGTATCGCTAGGCTCGAC 3453 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | || || |||||||| |||| |||||| ||||| |||||||| Sbjct 3454 TTCGAGGGTGATGGTTTTACCTGTCAACGTCTTGACGAAGATCTGCAT 3501 Score = 102 bits (112), Expect = 8e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 |||| |||||| ||| ||||| ||||||||||| ||||| ||||| || | || ||| Sbjct 3521 ACCAAATGCAGGGTGGATTCCTTTTGAATGTTATAATCGGAAAGGGTACGGCCATCTTCG 3580 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 || || ||||||||||| || || || || ||||| | |||| | ||| || | | || Sbjct 3581 AGTTGTTTGCCGGCGAAAATAAGACGTTGCTGGTCGGGAGGAATTCCCTCTTTAT-CTTG 3639 Query 41774 ATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 | |||| || | ||| | | ||||| || | ||| || || | ||| || || || Sbjct 3640 AATTTTGGCCTTGACGTTTTCGATGGTGTCACTGGGCTCTACTTCTAACGTGATGGTCTT 3699 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || |||| || || ||||| || ||||| Sbjct 3700 GCCGGTCAAGGTTTTCACGAAGATTTGCAT 3729 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 |||| ||||| ||| || || || || ||||| ||||| | ||| | | || ||| Sbjct 4661 ACCAAATGCAACGTAGATTCTTTTTGGATATTATAATCGGACAAGGTCCTTCCATCTTCG 4720 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||| |||||||| || |||| || |||||||| | || | || || ||||| | Sbjct 4721 AGCTGTTTGCCGGCAAAGATCAAACGTTGTTGGTCGGGAGGGATGCCTTCTTTGTCTTGG 4780 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 ||||| ||||| | ||||||||| | ||| || || | || |||||||| Sbjct 4781 ATTTTAGCCTTCACATTTTCGATAGTGTCGCTAGGCTCGACTTCGAGGGTAATCGTTTTG 4840 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || |||| || ||||||||||| ||||| Sbjct 4841 CCGGTCAAGGTTTTTACGAAAATTTGCAT 4869 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 41659 ATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTG 41718 |||||| ||| || ||||| ||||| ||||| ||||| || | | || ||||| || Sbjct 3754 ATGCAGAGTGGATTCTTTCTGGATGTTGTAGTCCGAGAGAGTTCTTCCATCTTCGAGTTG 3813 Query 41719 CTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTT 41778 || |||||||| || || || ||||| || | || | | || ||||| |||||| Sbjct 3814 TTTACCGGCGAAGATGAGACGTTGTTGATCGGGTGGGATTCCTTCTTTGTCTTGGATTTT 3873 Query 41779 TTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCG 41837 |||| ||| | | || ||||| | ||| || || | || || |||||||| | Sbjct 3874 G-GCTTTCACGTTTTCGATCGTATCGCTAGGCTCGACTTCGAGTGTGATTGTTTTACCGG 3932 Query 41838 TCAGCGTCTTTACGAAAATCTGCAT 41862 | | ||||||||||||||||||||| Sbjct 3933 TTAACGTCTTTACGAAAATCTGCAT 3957 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 41648 CGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCG 41707 || || |||| ||||| ||| || || ||||| |||||||| ||||| || | || Sbjct 3971 CGCAAAACCAAATGCAACGTCGATTCTTTTTGAATATTATAGTCCGAGAGAGTCCTACCG 4030 Query 41708 TCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTG 41767 || ||||| || || |||||||| || | || || ||||| | ||||| | ||| || Sbjct 4031 TCTTCGAGTTGTTTACCGGCGAAAATTAAACGTTGCTGGTCGGGGGGAATTCCCTCTTTA 4090 Query 41768 TCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTAT 41826 || ||| |||| || | || | | |||||||| | ||| || || | || || Sbjct 4091 TCT-TGAATTTTGGCCTTGACATTTTCGATCGTGTCGCTTGGCTCGACTTCGAGTGTGAT 4149 Query 41827 CGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| || |||| || ||||||||||| ||||| Sbjct 4150 GGTTTTTCCTGTCAAGGTTTTTACGAAAATTTGCAT 4185 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 41672 TCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 41731 || || || ||||||||||| || ||||| | |||| ||||| || || || ||||| Sbjct 4907 TCTTTTTGGATGTTATAGTCCGAAAGGGTTCTACCGTCTTCGAGTTGTTTTCCAGCGAAG 4966 Query 41732 ATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGAC 41791 || || || || || || | || | || || || || |||||| |||| ||| Sbjct 4967 ATGAGACGTTGCTGATCGGGAGGGATGCCTTCTTTATCTTGGATTTTC-GCTTTGACGTT 5025 Query 41792 GAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 | | ||||||||||| ||| || || | || || |||||||| |||| ||| || || Sbjct 5026 TTCGATAGTGTCGCTCGGCTCTACTTCGAGGGTGATGGTTTTACCAGTCAACGTTTTAAC 5085 Query 41851 GAAAATCTGCATGTT 41865 || |||||||| || Sbjct 5086 AAAGATCTGCATTTT 5100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461956682562400