Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasteatoda_20tepidariorum_20[refseq_20GCF_5F000365465.2_202017-04- 14] 16,533 sequences; 1,445,396,121 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq14474 141 1e-28 seq546 113 5e-20 >seq14474 Length=2471489 Score = 141 bits (156), Expect = 1e-28 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 53384 CCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCA 53443 ||| ||||||| ||||||| ||| ||| || ||||||||||| || ||||||||||| Sbjct 1674016 CCTTCATATGTCTCGTATGTTCCCAACTTTTCGGCTAGTTCACAGCTAGCCTCTAATGCG 1674075 Query 53444 CCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAAT 53503 | ||||||||||||| || || | |||||| | ||| ||||| ||||||||| Sbjct 1674076 GCAAAATAAATGGTTTCAAAAATGTCTGCATTTAGCTTTTGAGCTTCTTCACTATCAAAT 1674135 Query 53504 GGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTA 53563 ||||| | | |||||||| || || ||||| |||||||| || || || || || ||| Sbjct 1674136 GGATATCTCATCAGAATAAAAGCATCCGCTAAACCTTGAACTCCTATTCCAATGGGCCTA 1674195 Query 53564 TGTCTCTTATTAGAGATTTCAGC 53586 || | ||||| || |||| || Sbjct 1674196 TGACGTTTATTTGATTTTTCCGC 1674218 Score = 125 bits (138), Expect = 8e-24 Identities = 108/134 (81%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209 || || ||||| ||||| || ||||| | |||||| |||||||| || || ||||| | Sbjct 1672514 ACCTGGAATTCACCAGATAAGACTCTTCTAGTGTAGATATTACTTGTGTAAGGTTCAATT 1672573 Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 53269 || ||||||||||| | ||| ||||| ||||||||||| |||||||| || | || ||| Sbjct 1672574 GATTCATTATTTCCAAGAATCTGAGCTGTTGATGCAGTTGGCATAGGCGCTAATAACAAA 1672633 Query 53270 CTATTTCTAAGACC 53283 |||||||||| ||| Sbjct 1672634 CTATTTCTAACACC 1672647 Score = 93.3 bits (102), Expect = 5e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 52876 CCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATT 52935 ||| ||||| |||||||| ||||| | || |||| | || || || ||||| | ||| Sbjct 1671512 CCAGCCGTAGAAATGCATGCTTGTGATCTTTCCATAATTAGGTTCAGCAATATGCACATT 1671571 Query 52936 CATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTT 52995 || || || |||||||| ||| | ||||| || || ||||||||||| | || | || Sbjct 1671572 CAAGGACTGGCTTTGATCAATGTAAGCTCCTCTATCAGCAGCCATTTTCAATATATTTTT 1671631 Query 52996 TTGTGGAATTTCCCAAATAGT 53016 || ||||||||||| | ||| Sbjct 1671632 CTGAGGAATTTCCCAGACAGT 1671652 Score = 87.8 bits (96), Expect = 2e-12 Identities = 109/148 (74%), Gaps = 6/148 (4%) Strand=Plus/Plus Query 53591 GGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTCTGACA---ATTACTTTG 53647 |||| |||||||||||| | |||||| ||||| || |||| | ||| || |||||| Sbjct 1692466 GGAACAGGATAATAATTTACATCTATGATTTTGTTTAGGT---TAACAGTGATAACTTTG 1692522 Query 53648 ACCACATCCTTCAGTTTGAGAAAATCAAATTGTCCATCTATTACAAACATGTTCAATGCA 53707 ||| || ||||| ||| ||||||||||| ||||||| | ||| | | || | ||| Sbjct 1692523 GTCACTTCTTTCAGCTTGCTAAAATCAAATTCTCCATCTTTCACATATCTATTAAGAGCA 1692582 Query 53708 ATAGATGCCAGATTACAAACGGCTACCT 53735 || || || | ||| || || || |||| Sbjct 1692583 ATGGAGGCTAAATTGCATACAGCAACCT 1692610 Score = 84.2 bits (92), Expect = 3e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 54770 CTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATG 54829 |||||| ||| || ||||||||||| ||||| || | || |||| ||| |||||||| Sbjct 1721251 CTAAATGTTTTCTTCGTTTCTTTGTGCAGATTGGAGATAGCAATTCGAGCAGCTAGAATA 1721310 Query 54830 GCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCAAT 54889 ||||| || ||||| | |||||| ||| || || ||||| || | || | || | | Sbjct 1721311 GCATAGTCTGGATGCTTTGTAGTCATAGTAGCAGCAATTTCAGCAGCTAGGTTATCTAGT 1721370 Query 54890 TCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAG 54935 || || || || || ||| ||| | || || || ||||||| Sbjct 1721371 TCAACTGTAGTGACACCAGGATACAAGCCACTTATTACTTTCATAG 1721416 >seq546 Length=398126 Score = 113 bits (124), Expect = 5e-20 Identities = 103/130 (79%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 24385 TTTCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGT 24444 ||||| | | |||||||||||||||||||| || | || |||||||| ||||| | | Sbjct 245626 TTTCAGTTTTGTCTTTAACATATGTATCAATTAACAAGCTGTACATTTCTGAATGGACAT 245567 Query 24445 TTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATAC 24504 | ||||| || |||||||| || || |||||||| ||||| |||| ||| |||||| || Sbjct 245566 TCTCAATAGCTATTTGAAAACCATAAAAACATCTGGCCTCTGTAACCTGAACTTCTTGAC 245507 Query 24505 AAAATCGTTC 24514 |||||||| Sbjct 245506 TGAATCGTTC 245497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593598900009840