Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasteatoda_20tepidariorum_20[refseq_20GCF_5F000365465.2_202017-04- 14] 16,533 sequences; 1,445,396,121 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq4472 98.7 1e-15 seq546 84.2 2e-11 >seq4472 Length=7509737 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| ||||| || ||||| | || |||||||| || || | || || ||| | | Sbjct 667121 ATGCAGATATTTGTGAAAACATTGACTGGCAAAACAATAACTTTGGAAGTAGAACCTAGT 667062 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | ||||| | || | ||||||| || ||||| || || || | || || Sbjct 667061 GATACTATTGAAAACG-TAAAAGCCAAAATTCAAGATAAAGAAGGAATTCCTCCCGATCA 667003 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || |||| || | ||| || |||||||| || || | || || ||| |||||||| Sbjct 667002 ACAGAGACTTATTTTCGCTGGAAAACAGCTAGAGGATGGTCGAACACTCTCAGACTACAA 666943 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||| ||||||||| |||| || ||||| || ||| | ||| | || || Sbjct 666942 CATTCAGAAGGAGTCCACACTTCATCTTGTTTTGAGGTTGCGTGGTGG 666895 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || || || ||||| ||||| | || || || ||| Sbjct 666665 ATGCAAATTTTCGTTAAGACTCTAACAGGAAAAACTATCACTTTAGAGGTAGAGCCCAGT 666606 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | ||||| |||| | ||||||| || ||||| || |||||| | || || Sbjct 666605 GACACAATAGAAAACG-TCAAAGCTAAAATTCAAGATAAAGAAGGAATCCCCCCAGATCA 666547 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||| | || || | || || ||||| || || || | || || | |||||||| Sbjct 666546 GCAAAGGCTTATTTTTGCCGGAAAACAACTAGAAGATGGTCGAACATTGTCAGACTACAA 666487 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||| ||||| || |||| || ||||| || Sbjct 666486 CATACAGAAAGAATCCACACTTCATCTTGT 666457 Score = 87.8 bits (96), Expect = 2e-12 Identities = 110/151 (73%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 40766 TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACG 40825 |||| | |||||||| ||||||||||| ||||| | || ||||| || ||||| | | Sbjct 666280 TCAAAGCAAAAATTCAAGACAAAGAGGGTATCCCTCCCGATCAGCAGCGTCTCATTTTTG 666221 Query 40826 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCA 40885 | ||||| || || || || | ||| ||||| ||||||||||| || ||||| ||| Sbjct 666220 CCGGCAAGCAACTTGAAGATGGGCGAACCCTTTCAGACTACAACATTCAAAAGGAATCCA 666161 Query 40886 CGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 | || ||| | || | || |||| || || Sbjct 666160 CTCTTCATTTGGTACTCCGTCTGAGAGGAGG 666130 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || ||||| | || || ||||||||||| | || || || | | Sbjct 667805 ATGCAAATTTTTGTCAAAACTTTAACTGGAAAAACCATCACATTAGAAGTTGAGCCTAGT 667746 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | ||| | |||| |||||| | || |||||||| || || | ||||| Sbjct 667745 GACACCATAGAAAATGTAAAGGCAAAAATCCAAGATAAAGAGGGTATTCCACCTGACCAA 667686 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | || | || ||||||||||| || || | ||| || | || || ||| Sbjct 667685 CAGCGTTTAATTTTTGCCGGCAAACAGCTTGAAGATGGGCGTACATTATCAGATTATAAC 667626 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||| || || | || ||||||| || ||| | |||| || || Sbjct 667625 ATCCAAAAAGAATCTACTTTGCATCTTGTATTGAGGCTGAGAGGAGG 667579 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || ||||| | || ||||| ||||| ||| | || || ||| ||| Sbjct 668489 ATGCAGATCTTTGTCAAAACTTTGACTGGCAAGACCATAACCTTGGAAGTTGAACCCAGT 668430 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | ||| | |||| ||||| | |||||||| || || ||| | |||||| Sbjct 668429 GACACCATTGAAAATGTAAAGGCTAAAATCCAAGACAAAGAAGGTATTCCCCCTGACCAG 668370 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| | || | || ||||| ||||| || || | || || || || || ||| Sbjct 668369 CAACGTTTAATTTTTGCTGGCAAGCAGCTCGAAGATGGCCGTACACTTTCAGATTATAAC 668310 Query 40870 ATCCAGAAGGAGGCCACGCTGCAT 40893 || ||||| || | || ||||| Sbjct 668309 ATACAGAAAGAATCAACTTTGCAT 668286 Score = 82.4 bits (90), Expect = 8e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||||||||| || || || ||||| || || | || || ||| | | Sbjct 666893 ATGCAGATCTTCGTAAAAACTCTAACAGGGAAAACTATTACTTTAGAGGTTGAACCAAGT 666834 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | ||| | || | || || | || ||||| || || || | ||||| Sbjct 666833 GACACTATTGAAAATGTTAAAGCCAAGATCCAAGATAAAGAAGGTATTCCTCCCGACCAA 666774 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| || |||| || || || ||| | || || | |||||| | ||||| ||| Sbjct 666773 CAACGTCTGATCTTTGCCGGGAAGCAGTTAGAAGATGGCCGCACCTTATCTGACTATAAC 666714 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 ||||| |||||| | || | ||||| |||||| Sbjct 666713 ATCCAAAAGGAGTCAACATTACATCTTGTGTTG 666681 >seq546 Length=398126 Score = 84.2 bits (92), Expect = 2e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 ||||| || || | ||||| ||||| |||| || || || ||||| |||| | || Sbjct 243531 GAGCCTCTTCTTAGGGAGAATCCCCGTAGGTTTGTTATCTTTCCCATTGAATATCAAGAT 243590 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 ||||||| ||||| || || || |||||||| ||||||||||| || || || || || Sbjct 243591 ATGTGGCAGATGTATAAGAAAGCAGAGGCGTCTTTCTGGACCGTAGAAGAAGTAGATCTA 243650 Query 116696 TCCAAGGAC 116704 || || ||| Sbjct 243651 TCAAAAGAC 243659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515112723512080