Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasteatoda_20tepidariorum_20[refseq_20GCF_5F000365465.2_202017-04- 14] 16,533 sequences; 1,445,396,121 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq2837 172 1e-37 seq8847 91.5 3e-13 >seq2837 Length=3397241 Score = 172 bits (190), Expect = 1e-37 Identities = 247/348 (71%), Gaps = 0/348 (0%) Strand=Plus/Minus Query 135593 TTTATACAGATAAAGACGAGTGGACTACGTGGaaaaaaaTACCCGATCCTGTTTTGCATA 135652 ||||| | ||| | || || ||| |||| |||||| |||| ||||||| ||| | |||| Sbjct 2847603 TTTATTCGGATGATGATGAATGGGCTACCTGGAAAGAAATGTCCGATCCAGTTCTTCATA 2847544 Query 135653 TAGAACTTAGGAGATGGGCGGATGTTTTTATTATAGCGCCCTTAACGGCAAATACGTTAG 135712 | |||| | | ||||| |||| | ||||| |||| || || || ||||| || | Sbjct 2847543 TCCAACTACGCCGTTGGGCTGATGCTCTTATTGTAGCCCCACTAGATGCTAATACTTTGG 2847484 Query 135713 CAAAAATAGCTAATGGTATATGCGATAATTTACTGACGTCTATTGTAAGAGCCTGGGATA 135772 | ||||| |||||||| ||||| || ||| | || |||| | | ||||| |||||| Sbjct 2847483 CTAAAATGGCTAATGGCATATGTGACAATCTTCTCACGTGCACCATCAGAGCTTGGGATC 2847424 Query 135773 CAAACAAACCACTCATTTTCTGTCCTGCAATGAATACTCTTATGTGGGAACATCCTATTA 135832 |||||||| ||||||||||||| ||||| || |||||||| || || ||| Sbjct 2847423 GCCTAAAACCACTGTTTTTCTGTCCTGCCATGAACACATACATGTGGGACCACCCACTTA 2847364 Query 135833 CAGAAAAACATATAGATACGTTAAAATATATGGGTTTCATAGAAATAGAATGCATAGaaa 135892 | | ||||||| | | || |||||| | |||||| | || ||| || | | | Sbjct 2847363 CGGCAAAACATGTCAAAACTTTAAAAGAGTTGGGTTATTTTGAGATACCTTGTGTTGCCA 2847304 Query 135893 aaaaaCTAGCATGTGGAGACGTAGGAAATGGTGCTATGGCAGAAGTTG 135940 ||| | | || || || || || || |||||| |||||||||||||| Sbjct 2847303 AAAGATTGGCTTGCGGTGATGTTGGTTATGGTGGTATGGCAGAAGTTG 2847256 >seq8847 Length=10843265 Score = 91.5 bits (100), Expect = 3e-13 Identities = 111/149 (74%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 189481 AGAAGGAAAAATGCATAGTTTTTTACGAATGTATTGGGCTAAGAAGATACTTGAATGGAC 189540 |||||| ||||||||| ||||| | || ||||||||||| ||||| ||||| |||||||| Sbjct 8080907 AGAAGGGAAAATGCATGGTTTTCTTCGCATGTATTGGGCAAAGAAAATACTGGAATGGAC 8080848 Query 189541 TAGAACACCTGAAGACGC-TTTGAGTTATAGTATCTATTTGAACAACAAGTACGAACTAG 189599 | | ||||| || || || || || | ||| ||||| || |||| ||| | ||| Sbjct 8080847 CAACAGCCCTGAGGAAGCATTAGAATT-TGCTATATATTTTAATGACAAATACAATTTAG 8080789 Query 189600 ACGGCACGGATCCTAACGGATACGTAGGT 189628 | || |||||||| || || || ||| Sbjct 8080788 ATGGTCGTGATCCTAATGGCTATGTTGGT 8080760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923006009841320