Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasteatoda_20tepidariorum_20[refseq_20GCF_5F000365465.2_202017-04- 14] 16,533 sequences; 1,445,396,121 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq10731 118 2e-21 seq8883 116 6e-21 seq4472 116 6e-21 seq11726 111 2e-19 seq13703 95.1 2e-14 seq435 86.0 9e-12 >seq10731 Length=335687 Score = 118 bits (130), Expect = 2e-21 Identities = 135/180 (75%), Gaps = 1/180 (1%) Strand=Plus/Minus Query 25890 TTTATAAATATAATTAAAAATTATATAAAATGT-CTTTAATTGATGTGTGTTATGAACAC 25948 |||||||| || || | ||| |||| || | |||| |||| | ||||||||||| Sbjct 173731 TTTATAAAAATGTTTTACTTTTAAATAATGAGTTCATTAAATGATATTTGTTATGAACAG 173672 Query 25949 ATTAAAGACTCATATTATTATGGTCTCTTTGGTGATTTTAAATTAGTTATAGATAAAACA 26008 || ||| |||| |||||| | ||||| ||||||||| || ||||||||||| | Sbjct 173671 ATCGAAGGTAATTATTGGTATGGTTTATTTGGAGATTTTAAACTAATTATAGATAAAGAA 173612 Query 26009 ACAGGTTGTTTTAATGCTACTAAGTTATGTAATTTAGGTGGTAAAAAATTTAAACAATGG 26068 || || | ||| |||||||||||||||||||| | || |||||||| || ||| | ||| Sbjct 173611 ACTGGATATTTCAATGCTACTAAGTTATGTAAATCTGGAGGTAAAAATTTCAAAGATTGG 173552 Score = 109 bits (120), Expect = 8e-19 Identities = 141/192 (73%), Gaps = 12/192 (6%) Strand=Plus/Minus Query 95335 TCACTTAATAATATATGTTATGAACACATTAAAGACTCATATTATTATGGTCTATTTGGT 95394 ||| | ||| |||| ||||||||||| || ||| |||| |||||| ||||||| Sbjct 173698 TCATTAAATGATATTTGTTATGAACAGATCGAAGGTAATTATTGGTATGGTTTATTTGGA 173639 Query 95395 GATTTTAAATTAGTTATAGATAAAACTACAGGTTGTTTTAATGCTACTAAATTATGTAAT 95454 ||||||||| || ||||||||||| || || | ||| ||||||||||| |||||||| Sbjct 173638 GATTTTAAACTAATTATAGATAAAGAAACTGGATATTTCAATGCTACTAAGTTATGTAAA 173579 Query 95455 TTAGGTGGTAAACAATATAGAGATTGGAAACGTTTAGAAAAATCTAAAGAACTTATAAAA 95514 | || |||||| | | | |||||| | | ||||| ||||||| ||| ||| Sbjct 173578 TCTGGAGGTAAAAATTTCAAAGATTG-----GCTAAGAAA----TAAAGAA--TAT-AAA 173531 Query 95515 ACATTAATAAAT 95526 ||||||| ||| Sbjct 173530 GCATTAATTAAT 173519 Score = 109 bits (120), Expect = 8e-19 Identities = 116/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 96455 TCTTTAATTGATGTATGTTATGAACACATCAAAGACTCATATTATTATGGTTTATTTGGT 96514 || |||| |||| | ||||||||||| ||| ||| |||| |||||||||||||| Sbjct 173698 TCATTAAATGATATTTGTTATGAACAGATCGAAGGTAATTATTGGTATGGTTTATTTGGA 173639 Query 96515 GATTTTAAATTAGTTATAGATAAAACCACAGGTTGTTTTAATGCTACTAAATTATGTAAT 96574 ||||||||| || ||||||||||| || || | ||| ||||||||||| |||||||| Sbjct 173638 GATTTTAAACTAATTATAGATAAAGAAACTGGATATTTCAATGCTACTAAGTTATGTAAA 173579 Query 96575 TTATCAGGAAAAAGATTTAGAAATTGGATTAGA 96607 | ||| |||| || | | ||||| | ||| Sbjct 173578 TCTGGAGGTAAAAATTTCAAAGATTGGCTAAGA 173546 >seq8883 Length=3689619 Score = 116 bits (128), Expect = 6e-21 Identities = 121/158 (77%), Gaps = 3/158 (2%) Strand=Plus/Plus Query 25914 ATAAAATG---TCTTTAATTGATGTGTGTTATGAACACATTAAAGACTCATATTATTATG 25970 |||||||| ||||||| ||| | | |||||| || |||||||| |||||||||| Sbjct 2144164 ATAAAATGACTTCTTTAAAAGATATTTATTATGAGCAAATTAAAGATAGTTATTATTATG 2144223 Query 25971 GTCTCTTTGGTGATTTTAAATTAGTTATAGATAAAACAACAGGTTGTTTTAATGCTACTA 26030 | | | ||| |||||||||||| | |||||||||| || || | | | |||||| ||| Sbjct 2144224 GATTGTCTGGAGATTTTAAATTAATAATAGATAAAAATACTGGATATGTCAATGCTTCTA 2144283 Query 26031 AGTTATGTAATTTAGGTGGTAAAAAATTTAAACAATGG 26068 || ||||||| | | | ||||||| ||||||| | ||| Sbjct 2144284 AGCTATGTAAATCAAGAGGTAAAAGATTTAAAAAGTGG 2144321 Score = 116 bits (128), Expect = 6e-21 Identities = 278/415 (67%), Gaps = 28/415 (7%) Strand=Plus/Plus Query 95345 ATATATGTTATGAACACATTAAAGACTCATATTATTATGGTCTATTTGGTGATTTTAAAT 95404 |||| | |||||| || |||||||| ||||||||||| | | ||| |||||||||| Sbjct 2144185 ATATTTATTATGAGCAAATTAAAGATAGTTATTATTATGGATTGTCTGGAGATTTTAAAT 2144244 Query 95405 TAGTTATAGATAAAACTACAGGTTGTTTTAATGCTACTAAATTATGTAATTTAGGTGGTA 95464 || | |||||||||| ||| || | | | |||||| |||| ||||||| | | | |||| Sbjct 2144245 TAATAATAGATAAAAATACTGGATATGTCAATGCTTCTAAGCTATGTAAATCAAGAGGTA 2144304 Query 95465 AACAATATAGAGATTGGAAACGTTTAGAAAAATCTAAAGAACTTATAAA---AACATTA- 95520 || || || | | ||| |||||||| ||||||| |||| | || ||| Sbjct 2144305 AAAGATTTAAAAAGTGG------TTAGAAAA---TAAAGAATCTATAGAGTTAATTTTAT 2144355 Query 95521 ATAAATGTCAGACGCGAGAATTC------CCGCGTCT---GGGaatataatataataagt 95571 || | | | | | ||||||| | || || | ||| | ||| || | Sbjct 2144356 ATTTAGCTAAAATCCTAGAATTCTAAATTCGGCCCCTCTAGAAAATTCATTATTTTATGA 2144415 Query 95572 aataataatcacgaaataca--taa---acaatataCTGGATATTATGTATCAAAAGATC 95626 ||| | || ||||| || | | | |||||| ||| |||||| || || ||| Sbjct 2144416 AATTA-AAGGTAGAAATGCAACTGAATTAAAATATAATGGGACTTATGTTTCTAAGGATT 2144474 Query 95627 TAATATTAGATATTGCATCTTGGATAGCTCCTGaattttatttaaaatgtaatgatataa 95686 |||| | |||| || | |||||| | |||||||||| | |||| || ||| | Sbjct 2144475 TAATTACAAATATGGCTTGTTGGATTTCACCTGAATTTTCTAAAAAAGTAAACGATGTTG 2144534 Query 95687 ttataaattattataataatgaatttaaatctttatctaaagaggatattaataa 95741 | || ||||||||| |||||||||||| || |||| | ||||||||||| Sbjct 2144535 TAATTAATTATTATGCTAATGAATTTAATGAAAAATGTAAAAATGATATTAATAA 2144589 Score = 114 bits (126), Expect = 2e-20 Identities = 125/164 (76%), Gaps = 4/164 (2%) Strand=Plus/Plus Query 96447 ATAAAATG---TCTTTAATTGATGTATGTTATGAACACATCAAAGACTCATATTATTATG 96503 |||||||| ||||||| ||| | | |||||| || || ||||| |||||||||| Sbjct 2144164 ATAAAATGACTTCTTTAAAAGATATTTATTATGAGCAAATTAAAGATAGTTATTATTATG 2144223 Query 96504 GTTTATTTGGTGATTTTAAATTAGTTATAGATAAAACCACAGGTTGTTTTAATGCTACTA 96563 | || | ||| |||||||||||| | |||||||||| || || | | | |||||| ||| Sbjct 2144224 GATTGTCTGGAGATTTTAAATTAATAATAGATAAAAATACTGGATATGTCAATGCTTCTA 2144283 Query 96564 AATTATGTAATTTATCAGGAAAAAGATTTAGAAATTGGATTAGA 96607 | ||||||| | | ||| |||||||||| ||| ||| ||||| Sbjct 2144284 AGCTATGTAAATCAAGAGGTAAAAGATTTAAAAAGTGG-TTAGA 2144326 >seq4472 Length=7509737 Score = 116 bits (128), Expect = 6e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || || || ||||| | ||||||||| ||||| |||||||| ||| |||||||||||| Sbjct 668263 CCTCCCCTTAGTCTGAGTACCAAATGCAAAGTTGATTCTTTCTGTATGTTATAATCTGAA 668322 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || | || ||| || | || || ||||||||||| || | |||||| || || ||| Sbjct 668323 AGTGTACGGCCATCTTCGAGCTGCTTGCCAGCAAAAATTAAACGTTGCTGGTCAGGGGGA 668382 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||| ||||| Sbjct 668383 ATACCTTCTTTGTCTTG 668399 Score = 111 bits (122), Expect = 2e-19 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | || || ||||| || | ||| |||||||| || ||||| |||||| Sbjct 667807 CCACCTCTTAACCTCAACACCAAGTGGAGAGTGGATTCTTTTTGAATGTTATAGTCTGAA 667866 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | | ||| || | ||||| || ||||| || | ||||||||||| |||||| Sbjct 667867 AGAGTGCGACCATCTTCAAGCTGTTTACCTGCAAAGATAAGCCTTTGCTGATCAGGAGGA 667926 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 |||||||| || ||||| |||||| | |||||| Sbjct 667927 ATTCCTTCCTTGTCTTGGATTTTGGCTTTAACGTTCTCAATAGTATCACTAGGCTCTACT 667986 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 |||| |||||| |||||||| || | |||||| | ||| || ||||| Sbjct 667987 TCTAATGTGATAGTTTTACCAGTAAGTGTTTTGACGAAAATCTGCAT 668033 Score = 107 bits (118), Expect = 3e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | || | ||||| || | ||||||||||| || ||||| || ||| Sbjct 668035 CCACCTCTCAACCTCAGCACCAAGTGAAGTGTAGATTCTTTTTGAATGTTATAGTCCGAA 668094 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | | ||| || | |||||||||||||||||||| | ||||||||| || ||| Sbjct 668095 AGAGTGCGACCATCTTCAAGTTGTTTTCCAGCAAAAATCAGACGTTGCTGATCAGGTGGA 668154 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||| ||||| Sbjct 668155 ATACCTTCTTTGTCTTG 668171 Score = 100 bits (110), Expect = 4e-16 Identities = 156/230 (68%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||||| ||| || || |||| ||| | ||||||||||| || || |||||||| Sbjct 667123 CCACCTCGAAGCCTCAAAACCAGATGGAGTGTAGATTCTTTTTGGATGTTGTAATCTGAG 667182 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || |||| || ||| || | || || ||||||||||||| | || ||||| || ||| Sbjct 667183 AGGGTTCGGCCATCTTCAAGCTGCTTACCAGCAAAAATCAGACGCTGTTGATCGGGTGGA 667242 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACT---TTCT 146227 || ||||| |||||||| ||||| ||| ||| Sbjct 667243 ATACCTTCCTTATCTTGAATTTTAGCTTTCACATTTTCTATGGTATC---ACTTGGTTCA 667299 Query 146228 ACTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 ||||||||||| || ||||| ||||| | ||||| | ||||||||||| Sbjct 667300 ACTTCTAGTGTAATAGTTTTTCCTGTCAGAGTTTTGACAAATATTTGCAT 667349 Score = 95.1 bits (104), Expect = 2e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 146081 GTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCA 146140 || |||||||| ||| || || ||||| | |||| | ||| |||| ||||||||| Sbjct 666469 GTGGATTCTTTCTGTATGTTGTAGTCTGACAATGTTCGACCATCTTCTAGTTGTTTTCCG 666528 Query 146141 GCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 |||||||| | ||||||||||| || || ||||||||||||||||| Sbjct 666529 GCAAAAATAAGCCTTTGCTGATCTGGGGGGATTCCTTCTTTATCTTG 666575 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| | ||||| ||||| || | ||||||||||| ||||| || || || Sbjct 668491 CCTCCTCTCAATCTTAGAACCAAGTGAAGTGTAGATTCTTTCTGAATATTGTAGTCAGAC 668550 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || | | ||| || ||||| || ||||| || ||||| || |||||||| || ||| Sbjct 668551 AGGGTACGACCATCTTCCAATTGCTTACCAGCGAAGATCAACCTCTGCTGATCAGGTGGA 668610 Query 146171 ATTCCTTCTTTATCTTG 146187 ||||||||||| || || Sbjct 668611 ATTCCTTCTTTGTCCTG 668627 Score = 93.3 bits (102), Expect = 6e-14 Identities = 125/182 (69%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 || || || ||||| || |||| | ||| |||| ||||||||||| ||||| | ||| Sbjct 666940 ATGTTGTAGTCTGAGAGTGTTCGACCATCCTCTAGCTGTTTTCCAGCGAAAATAAGTCTC 666999 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTA 146215 || ||||| ||||||||||||||||||||||| |||| Sbjct 667000 TGTTGATCGGGAGGAATTCCTTCTTTATCTTGAATTTTGGCTTTTACGTTTTCAATAGTA 667059 Query 146216 TCTGAACTTTCTACTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGC 146275 || | ||||||||| | || |||||||| || || |||||||| | ||||| ||| Sbjct 667060 TCACTAGGTTCTACTTCCAAAGTTATTGTTTTGCCAGTCAATGTTTTCACAAATATCTGC 667119 Query 146276 AT 146277 || Sbjct 667120 AT 667121 Score = 93.3 bits (102), Expect = 6e-14 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| ||||| || || ||||| | ||| |||||||||||||| || |||||||||| Sbjct 667577 TTCCTCCTCTCAGCCTCAATACAAGATGCAAAGTAGATTCTTTTTGGATGTTATAATCTG 667636 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | | || | | ||| || | ||||| || |||||||| || | || || || || | Sbjct 667637 ATAATGTACGCCCATCTTCAAGCTGTTTGCCGGCAAAAATTAAACGCTGTTGGTCAGGTG 667696 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||| || ||||||||||| Sbjct 667697 GAATACCCTCTTTATCTTG 667715 >seq11726 Length=1646561 Score = 111 bits (122), Expect = 2e-19 Identities = 100/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||||||||| | ||| |||||||||||||| ||||| ||||| ||||| || Sbjct 660154 CCACCTCTAAGTCTGAGTACTAAATGTAAAGTAGACTCTTTCTGAATATTGTAATCGGAT 660095 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || |||| | ||| || || ||||| |||||||| ||||||| || || || || ||| Sbjct 660094 AGTGTTCGCCCATCTTCCAACTGTTTGCCAGCAAAGATCAATCGCTGTTGGTCAGGGGGA 660035 Query 146171 ATTCCT 146176 |||||| Sbjct 660034 ATTCCT 660029 >seq13703 Length=2289824 Score = 95.1 bits (104), Expect = 2e-14 Identities = 88/109 (81%), Gaps = 2/109 (2%) Strand=Plus/Plus Query 146069 ACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATC 146127 || ||||| | ||||||||| ||| || || ||||||||||| ||||||| | ||| || Sbjct 2085179 ACTAAATGAAGAGTAGATTCCTTTTGA-ATGTTATAATCTGATAGAGTTCGTCCATCTTC 2085237 Query 146128 TAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCT 146176 || ||||| || |||||||| |||||||| ||||| || ||||| ||| Sbjct 2085238 CAACTGTTTGCCGGCAAAAATTAATCTTTGTTGATCAGGGGGAATACCT 2085286 >seq435 Length=3082058 Score = 86.0 bits (94), Expect = 9e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 146081 GTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCA 146140 || |||||||| || | ||||||||| ||||| | | ||||| || || || || Sbjct 740629 GTTGATTCTTTTTGAATGTCATAATCTGATAGAGTGCGTTTGTCATCCAACTGCTTACCC 740688 Query 146141 GCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 ||||| |||| ||||| ||||| |||||||||||||||| |||||| Sbjct 740689 GCAAATATCAGCCTTTGTTGATCTGGAGGAATTCCTTCTTCATCTTG 740735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743372740975360