Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasteatoda_20tepidariorum_20[refseq_20GCF_5F000365465.2_202017-04- 14] 16,533 sequences; 1,445,396,121 total letters Query= NC_003038.1 Length=212482 Score E Sequences producing significant alignments: (Bits) Value seq10731 104 3e-17 >seq10731 Length=335687 Score = 104 bits (114), Expect = 3e-17 Identities = 113/149 (76%), Gaps = 1/149 (1%) Strand=Plus/Plus Query 145985 AAATTGTTTACCTCCACTATTGCATAATTTAGTTGCGTTAAAACATTCTGTGTTCTTGTC 146044 ||||| |||||||||| || ||||| ||||| || || ||| || | || | || || Sbjct 173562 AAATT-TTTACCTCCAGATTTACATAACTTAGTAGCATTGAAATATCCAGTTTCTTTATC 173620 Query 146045 GACTACGAGCTTAAAATCTCTAAATAACCCATAATAAAAGTTATCTTTGATTTTTTCATA 146104 | | || |||||||||| |||||| ||||| || | ||| ||| ||| | |||||| Sbjct 173621 TATAATTAGTTTAAAATCTCCAAATAAACCATACCAATAATTACCTTCGATCTGTTCATA 173680 Query 146105 ACAAATGTCATTTAATGATGCCATTATTT 146133 |||||| ||||||||||| |||||||| Sbjct 173681 ACAAATATCATTTAATGAACTCATTATTT 173709 Score = 95.1 bits (104), Expect = 2e-14 Identities = 280/421 (67%), Gaps = 22/421 (5%) Strand=Plus/Plus Query 1705 TTTTTATCCATTGTT--TTATATTCATTAACGAAATAATTTATAATTATATTGTTACATT 1762 ||||||| ||| || || ||| |||||| |||||| | ||| ||||| || Sbjct 173298 TTTTTAT--ATTTTTCATTGAATTTATTAACATAATAATCAGATACAATACTGTTAACTT 173355 Query 1763 TATCATAAAATTCTACTGAAATCCAAGAAGCAATGTCAAG-AATAAATTCTTTTGGAAGA 1821 || | |||||| | |||||||||| ||||||| | ||| |||||| ||| | | | Sbjct 173356 TAAAAGTAAATTCAAGTGAAATCCAACAAGCAAT-TGAAGTAATAAAATCTCTACATACA 173414 Query 1822 TATGTACCTGTAATTTGTTTTGTAATTTCAT---CATTGTTATCTCCCTTAATTTCATAT 1878 |||||||||| || | || ||| || || || ||| || |||| ||| Sbjct 173415 TATGTACCTGATATATTTTCAGTATATTGATTTTCACCTTTAACTGTTTTAA----ATAG 173470 Query 1879 AACAACGACTCGGTTTTTATG-TCAC--ACCGGGTTTC----ATAATATTGAATTAAttt 1931 || || || || || || | ||| |||| |||||| | ||||||| Sbjct 173471 AAAAAATGCTTGGAGAGAATTCTCGCCAACCACTTTTCGAGAATAATAATTAATTAATGC 173530 Query 1932 ttttGAT-CTTAAAGTTTTATTCCAATCAACAAATCTTTTTCCTCCTAAAACACACAGCT 1990 ||| || ||| | | ||| |||||| || |||| ||||| | ||| | || Sbjct 173531 TTTATATTCTTTATTTCTTAG-CCAATCTTTGAAATTTTTACCTCCAGATTTACATAACT 173589 Query 1991 TGGTGGCGTTAAAACAACCCGtttttttATCAACAATTAACGGAAAATCTCCAAACAACC 2050 | || || || ||| | || |||| |||||| | ||||| |||||||||||| || | Sbjct 173590 TAGTAGCATTGAAATATCCAGTTTCTTTATCTATAATTAGTTTAAAATCTCCAAATAAAC 173649 Query 2051 CCTTATAAAAGGTACCTTTTATCTGTTCATAACACACTTCATTTAAAGAATCCATTATTT 2110 | | || | |||||| |||||||||||||| | |||||||| ||| |||||||| Sbjct 173650 CATACCAATAATTACCTTCGATCTGTTCATAACAAATATCATTTAATGAACTCATTATTT 173709 Query 2111 A 2111 | Sbjct 173710 A 173710 Score = 91.5 bits (100), Expect = 2e-13 Identities = 134/187 (72%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 145151 ATAATATTCCATTAACttttttgatt-tttCTAACTTCGTCCAGTCTCTAAATCTTTTTC 145209 |||||| | ||||| ||| ||| ||| | ||| | ||| ||| | || |||| | Sbjct 173513 ATAATAATTAATTAATGCTTTATATTCTTTATTTCTTAG-CCAATCTTTGAAATTTTTAC 173571 Query 145210 CTCCACTATTGCATAATTTAGTTGCGTTAAAACATTCTGTGTTCTTGTCGACTACGAGCT 145269 ||||| || ||||| ||||| || || ||| || | || | || || | | || | Sbjct 173572 CTCCAGATTTACATAACTTAGTAGCATTGAAATATCCAGTTTCTTTATCTATAATTAGTT 173631 Query 145270 TAAAATCTCCAAATAACCCATAATAAAAGTTAtttttgattttttCATAACAAACGTCAT 145329 |||||||||||||||| ||||| || | ||| || ||| | ||||||||||| |||| Sbjct 173632 TAAAATCTCCAAATAAACCATACCAATAATTACCTTCGATCTGTTCATAACAAATATCAT 173691 Query 145330 TTAATGA 145336 ||||||| Sbjct 173692 TTAATGA 173698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 679673907856560