Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasteatoda_20tepidariorum_20[refseq_20GCF_5F000365465.2_202017-04- 14] 16,533 sequences; 1,445,396,121 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq16166 132 4e-26 seq14474 132 4e-26 seq546 114 1e-20 seq4472 113 4e-20 seq435 87.8 2e-12 >seq16166 Length=1540 Score = 132 bits (146), Expect = 4e-26 Identities = 171/231 (74%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 23267 TCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATC-GGACACATGAGACT 23325 |||||||| |||| | || || || || || |||| |||| || ||||| ||||| Sbjct 33 TCAAATTCTTCACCCCAGCAATCATGGAGCCCAGGTGATT-CATCAGGGCACATAAGACT 91 Query 23326 CCACATTGAGTCATTTTCAACGCGTCT-CATAAAAAGATCCGGTATCCATAGAGCGTAGA 23384 ||||||| || |||||||| | ||| |||||| | ||| |||||||| | || || | Sbjct 92 CCACATTTCATCCTTTTCAAC-CCTCTGCATAAATAAATCAGGTATCCACAATGCATAAA 150 Query 23385 ACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCA 23444 ||| || | || || ||||||||||| ||||||||||||||||| | ||||| | Sbjct 151 ACAAATCTCTTGCACGTTGTTCCTCTTTGCCAGTGTTCTTTTTCAAATCAAGGAAGTCAA 210 Query 23445 ACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495 | | || |||||||| ||||| | ||||| ||||| || || || |||| Sbjct 211 AAATATCAGCATGCCAAGGCTCTAAGTAAATAGCAAAAGCTCCAGGCCTCT 261 >seq14474 Length=2471489 Score = 132 bits (146), Expect = 4e-26 Identities = 171/231 (74%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 23267 TCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATC-GGACACATGAGACT 23325 |||||||| |||| | || || || || || |||| |||| || ||||| ||||| Sbjct 1696365 TCAAATTCTTCACCCCAGCAATCATGGAGCCCAGGTGATT-CATCAGGGCACATAAGACT 1696423 Query 23326 CCACATTGAGTCATTTTCAACGCGTCT-CATAAAAAGATCCGGTATCCATAGAGCGTAGA 23384 ||||||| || |||||||| | ||| |||||| | ||| |||||||| | || || | Sbjct 1696424 CCACATTTCATCCTTTTCAAC-CCTCTGCATAAATAAATCAGGTATCCACAATGCATAAA 1696482 Query 23385 ACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCA 23444 ||| || | || || ||||||||||| ||||||||||||||||| | ||||| | Sbjct 1696483 ACAAATCTCTTGCACGTTGTTCCTCTTTGCCAGTGTTCTTTTTCAAATCAAGGAAGTCAA 1696542 Query 23445 ACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495 | | || |||||||| ||||| | ||||| ||||| || || || |||| Sbjct 1696543 AAATATCAGCATGCCAAGGCTCTAAGTAAATAGCAAAAGCTCCAGGCCTCT 1696593 >seq546 Length=398126 Score = 114 bits (126), Expect = 1e-20 Identities = 165/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 57507 GATGAACCACTTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCA 57566 ||||| || ||| | |||||||||||||| ||||| || ||||| |||||||||| | Sbjct 243528 GATGAGCCTCTTCTTAGGGAGAATCCCCGTAGGTTTGTTATCTTTCCCATTGAATATCAA 243587 Query 57567 GACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGAC 57626 || || ||| | ||||| || || ||||| || || || |||||||| ||||||||||| Sbjct 243588 GATATGTGGCAGATGTATAAGAAAGCAGAGGCGTCTTTCTGGACCGTAGAAGAAGTAGAT 243647 Query 57627 CTGTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 || || || || | || ||||| || ||| | || | | | || || Sbjct 243648 CTATCAAAAGACTTTTCTGACTGGGAAAAACTGAAATCAGAAGAAAAACACTTCATCTCT 243707 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGT 57739 || | || || ||||| || ||| |||||| ||||| || || || ||||| Sbjct 243708 CATATCTTAGCCTTTTTTGCTGCAAGCGATGGAATTGTAAATGAAAACTTGGT 243760 >seq4472 Length=7509737 Score = 113 bits (124), Expect = 4e-20 Identities = 166/232 (72%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || || ||| |||| ||||| || || ||| | || |||||||| Sbjct 668489 ATGCAGATCTTTGTCAAAACTTTGACTGGCAAGACCATAACCTTGGAAGTTGAACCCAGT 668430 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| || || | ||| ||||| ||||| | || || |||||| Sbjct 668429 GACACCATTGAAAATGTAAAGGCTAAAATCCAAGACAAAGAAGGTATTCCCCCTGACCAG 668370 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA---CTCTATGACTATGAGCGATTAT 31369 || ||| |||| || |||||||| ||| | ||||| | || ||| | || ||||| Sbjct 668369 CAACGTTTAATTTTTGCTGGCAAGCAGCTCGAAGATGGCCGTAC-ACTTTCAG--ATTAT 668313 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || |||||||| ||| | ||| ||||||| ||||| ||||| |||| Sbjct 668312 AACATACAGAAAGAATCAACTTTGCATTTGGTACTCAGACTAAGGGGAGGTA 668261 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || || ||||||||||| ||||| || || | || |||||||| Sbjct 667349 ATGCAAATATTTGTCAAAACTCTGACAGGAAAAACTATTACACTAGAAGTTGAACCAAGT 667290 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| || ||| | ||| || |||||||| | || ||||| || Sbjct 667289 GATACCATAGAAAATGTGAAAGCTAAAATTCAAGATAAGGAAGGTATTCCACCCGATCAA 667230 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA--CTCTATGACTATGAGCGATTATA 31370 |||||||| || || ||||| || ||| | ||||| | | || | | ||||| | Sbjct 667229 CAGCGTCTGATTTTTGCTGGTAAGCAGCTTGAAGATGGCCGAACCCTCTCA--GATTACA 667172 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGT 31401 |||| ||||||||||| || || |||||||| Sbjct 667171 ACATCCAAAAAGAATCTACACTCCATCTGGT 667141 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || || ||| | || || ||||| ||||| | || ||||| || Sbjct 667805 ATGCAAATTTTTGTCAAAACTTTAACTGGAAAAACCATCACATTAGAAGTTGAGCCTAGT 667746 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| || || | ||| || || || || | || || ||||| Sbjct 667745 GACACCATAGAAAATGTAAAGGCAAAAATCCAAGATAAAGAGGGTATTCCACCTGACCAA 667686 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATTATAA 31371 |||||| |||| || || ||||||||| | ||||| || || | | |||||||| Sbjct 667685 CAGCGTTTAATTTTTGCCGGCAAACAGCTTGAAGATGGGCGTAC-ATTATCAGATTATAA 667627 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| ||||||||||| ||| | ||||| ||| | || ||||| || || Sbjct 667626 CATCCAAAAAGAATCTACTTTGCATCTTGTATTGAGGCTGAGAGGAGG 667579 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| || || ||||| || || || || || || | || |||||||| Sbjct 668261 ATGCAGATTTTTGTTAAAACTCTAACTGGGAAGACAATTACTCTAGAAGTTGAACCAAGT 668202 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| || ||| | ||| ||||| ||||| | || || || ||| Sbjct 668201 GATACAATTGAAAATGTAAAAGCTAAAATCCAAGACAAAGAAGGTATTCCACCTGATCAG 668142 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||||| || || ||||| ||||| | ||||| | ||| | || |||||| Sbjct 668141 CAACGTCTGATTTTTGCTGGAAAACAACTTGAAGATGGTCGCACTCTTTCGGACTATAAC 668082 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||||||||||| || ||||| |||| || || |||| || |||| Sbjct 668081 ATTCAAAAAGAATCTACACTTCACTTGGTGCTGAGGTTGAGAGGTGGTA 668033 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||||||||| |||||||| ||||| ||||| ||||| | || || || || Sbjct 666666 CATGCAAATTTTCGTTAAGACTCTAACAGGAAAAACTATCACTTTAGAGGTAGAGCCCAG 666607 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | |||| |||||| | ||| || || ||||| | || || || || Sbjct 666606 TGACACAATAGAAAACGTCAAAGCTAAAATTCAAGATAAAGAAGGAATCCCCCCAGATCA 666547 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| | || || || || || ||||| | ||||| | || || || || || Sbjct 666546 GCAAAGGCTTATTTTTGCCGGAAAACAACTAGAAGATGGTCGAACATTGTCAGACTACAA 666487 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || |||||||| || |||||||| || || || ||| | || || Sbjct 666486 CATACAGAAAGAATCCACACTTCATCTTGTCCTGAGGCTGCGTGGAGG 666439 >seq435 Length=3082058 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| ||||| ||||| || ||||| || ||||| || || | || || || || Sbjct 740828 AAAATGCATATTTTTGTAAAAACCCTGACTGGAAAAACAATAACTCTTGAAGTAGAGTCG 740769 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || |||| || | | || ||||| | ||| || | ||||| | || || || Sbjct 740768 TCTGACACCATCAATATTGTGAAACAAAAAATTCAAGATGAAGAAGGAATTCCTCCAGAT 740709 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 || || | || ||||| || || || |||||||| ||| ||| | |||||| Sbjct 740708 CAACAAAGGCTGATATTTGCGGGTAAGCAGTTGGATGACAAACGCACTCTATCAGATTAT 740649 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGC 31417 |||||||||||||||| || ||||| |||| || | |||| ||| Sbjct 740648 GACATTCAAAAAGAATCAACGCTTCACATGGTGCTACGTTTGAGAGGC 740601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445674276801360