Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasteatoda_20tepidariorum_20[refseq_20GCF_5F000365465.2_202017-04- 14] 16,533 sequences; 1,445,396,121 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq14474 141 1e-28 seq546 100 4e-16 >seq14474 Length=2471489 Score = 141 bits (156), Expect = 1e-28 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 62622 CCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCA 62681 ||| ||||||| || |||| ||| ||| || ||||||| ||| || ||||||||||| Sbjct 1674016 CCTTCATATGTCTCGTATGTTCCCAACTTTTCGGCTAGTTCACAGCTAGCCTCTAATGCG 1674075 Query 62682 CCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAAT 62741 | |||||||||||||||| || | |||||| | ||| ||||| ||||||||| Sbjct 1674076 GCAAAATAAATGGTTTCAAAAATGTCTGCATTTAGCTTTTGAGCTTCTTCACTATCAAAT 1674135 Query 62742 GGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTA 62801 ||||| | | |||||||| || |||||||| |||||||| || || || || || ||| Sbjct 1674136 GGATATCTCATCAGAATAAAAGCATCCGCTAAACCTTGAACTCCTATTCCAATGGGCCTA 1674195 Query 62802 TGTCTCTTATTAGAGATTTCAGC 62824 || | ||||| || |||| || Sbjct 1674196 TGACGTTTATTTGATTTTTCCGC 1674218 Score = 129 bits (142), Expect = 7e-25 Identities = 109/134 (81%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447 || |||||||| ||||| || ||||| | |||||| |||||||| || || ||||| | Sbjct 1672514 ACCTGGAATTCACCAGATAAGACTCTTCTAGTGTAGATATTACTTGTGTAAGGTTCAATT 1672573 Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62507 || ||||||||||| | ||| ||||| ||||||||||| |||||||| || | || ||| Sbjct 1672574 GATTCATTATTTCCAAGAATCTGAGCTGTTGATGCAGTTGGCATAGGCGCTAATAACAAA 1672633 Query 62508 CTATTTCTAAGACC 62521 |||||||||| ||| Sbjct 1672634 CTATTTCTAACACC 1672647 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 62114 CCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATT 62173 ||| ||||| |||||||| || || | || |||| | || || || ||||| | ||| Sbjct 1671512 CCAGCCGTAGAAATGCATGCTTGTGATCTTTCCATAATTAGGTTCAGCAATATGCACATT 1671571 Query 62174 CATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTT 62233 || || || |||||||| ||| | ||||| || || ||||||||||| | || | || Sbjct 1671572 CAAGGACTGGCTTTGATCAATGTAAGCTCCTCTATCAGCAGCCATTTTCAATATATTTTT 1671631 Query 62234 TTGTGCAATTTCCCAAATAGT 62254 || | ||||||||| | ||| Sbjct 1671632 CTGAGGAATTTCCCAGACAGT 1671652 >seq546 Length=398126 Score = 100 bits (110), Expect = 4e-16 Identities = 100/130 (77%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 33832 TTTCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGT 33891 ||||| | | ||||||||||| ||||| || || | || |||||||| ||||| | | Sbjct 245626 TTTCAGTTTTGTCTTTAACATATGTATCAATTAACAAGCTGTACATTTCTGAATGGACAT 245567 Query 33892 TTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTAC 33951 | ||||| || || ||||| || || |||||||| ||||| |||| ||| |||||| || Sbjct 245566 TCTCAATAGCTATTTGAAAACCATAAAAACATCTGGCCTCTGTAACCTGAACTTCTTGAC 245507 Query 33952 AAAATCGTTC 33961 |||||||| Sbjct 245506 TGAATCGTTC 245497 Score = 84.2 bits (92), Expect = 3e-11 Identities = 151/221 (68%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 33386 TTTTTTAAATCCCAATTCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCAT 33445 ||||| | | ||||| || || ||| |||||||| || ||||| || ||| |||||| Sbjct 254096 TTTTTCACAACCCAACTCTACAAGCAACCTATCTGCAACAAATTCAATGTATTGTTTCAT 254037 Query 33446 CATTTCACAATTCATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTC 33505 | | ||||||||||| | || || ||||| | || |||||||| ||||| Sbjct 254036 GAGTGTGTTGTTCATTCCTATCAAGGCGACAGGTAGAGCTTCTGTGAGAAATTCCTGTTC 253977 Query 33506 AATGGATACCGCATTTGTTATAATAAATCTAACGGTTTCTTCACTCGGTGGATGTAATAA 33565 ||||| || |||| ||| | ||| | ||| ||| ||| || | ||||| Sbjct 253976 AATGGCAACTGCATCTGTCACAATCTGTGCAACTCTTTTTTCTGAAGGCTTGTTTAATAG 253917 Query 33566 ATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCT 33606 ||| | ||||| | || || ||||| ||||| ||||||| Sbjct 253916 ATGACTGAACATGAGGCAGGCAAAATCACAGTGAAGACCCT 253876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629687440320240