Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasteatoda_20tepidariorum_20[refseq_20GCF_5F000365465.2_202017-04- 14] 16,533 sequences; 1,445,396,121 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq546 141 9e-29 seq16166 86.0 6e-12 seq14474 86.0 6e-12 >seq546 Length=398126 Score = 141 bits (156), Expect = 9e-29 Identities = 152/201 (76%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 12014 AAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAG 12073 || || ||||||||||| ||||| || | |||||||| |||| ||||| || ||| Sbjct 243757 AAGTTTTCATTTACAATTCCATCGCTTGCAGCAAAAAAGGCTAAGATATGAGAGATGAAG 243698 Query 12074 TATTTTTCGTCTTTAGTTAATTTATCCCAATCATCTAAATCTTTTGATAAATCTACTTCT 12133 | |||||| ||| | | ||| ||||| ||| || |||||||||| |||||||||| Sbjct 243697 TGTTTTTCTTCTGATTTCAGTTTTTCCCAGTCAGAAAAGTCTTTTGATAGATCTACTTCT 243638 Query 12134 TCAACGGTCCAAAAACTTGCCACTGATTGTTTATACATTTTCCAGATATCATGATACTTA 12193 || |||||||| ||| ||| ||| || |||||||| | ||| ||||| ||||| | | Sbjct 243637 TCTACGGTCCAGAAAGACGCCTCTGCTTTCTTATACATCTGCCACATATCTTGATATTCA 243578 Query 12194 ATAGGGAAAATAACGAACCTA 12214 || || || ||||| |||||| Sbjct 243577 ATGGGAAAGATAACAAACCTA 243557 Score = 104 bits (114), Expect = 2e-17 Identities = 92/115 (80%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 11880 TTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATAT 11939 |||| | || ||| | ||||||||||| ||||| || || |||||||||||||| | || Sbjct 245626 TTTCAGTTTTGTCTTTAACATATGTATCAATTAACAAGCTGTACATTTCTGAATGGACAT 245567 Query 11940 TTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATC 11994 | || |||||||||||||| ||||| ||||||| ||||||| | ||| || || Sbjct 245566 TCTCAATAGCTATTTGAAAACCATAAAAACATCTGGCCTCTGTAACCTGAACTTC 245512 Score = 104 bits (114), Expect = 2e-17 Identities = 154/218 (71%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || ||||| || |||| ||||||| ||||| | || ||||| | |||| || || Sbjct 248754 TCATCTCTGCTGATTAATTCATTACTGAATGTGAGACCAGGCATAAGACCTCTCTTCTTC 248695 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| || |||| ||||| || ||||| || ||||| || ||||| ||||||||||| Sbjct 248694 AACCAGAAAATAGATGCAAAGGAGCCAGAGAAAAATATGCCTTCCACGGCTGCAAATGCA 248635 Query 11774 ACTACTCTTTCTCCA---TATACCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCT 11830 || |||||||||||| | | || ||||| ||||| || ||||| || || Sbjct 248634 ACAACTCTTTCTCCAAAGGAAGCATTCGTGCTACTGATCCAGTTCAGCGCCCAGTCCGCC 248575 Query 11831 TTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAA 11868 ||| |||| || || || ||||| || || || || Sbjct 248574 TTCCTTTTAACACAGGGCAAAGTTTCGATCGCATTGAA 248537 >seq16166 Length=1540 Score = 86.0 bits (94), Expect = 6e-12 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 37984 GGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACC 38043 || ||||| ||| ||| |||||| ||||| || | | ||||||||||||||||| | Sbjct 78 GGGCACATAAGACTCCACATTTCATCCTTTTCAACCCTCTGCATAAATAAATCAGGTATC 137 Query 38044 CATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAG 38103 || |||||| ||| |||||| | | | | ||| || || || |||||| | || Sbjct 138 CACAATGCATAAAACAAATCTCTTGCACGTTGTTCCTCTTTGCCAGTGTTCTTTTTCAAA 197 Query 38104 CTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGT 38163 || || || || |||||||| ||||| || |||| ||||| | | ||||| || Sbjct 198 TCAAGGAAGTCAAAAATATCAGCATGCCAAGGCTCTAAGTAAATAGCAAAAGCTCCAGGC 257 Query 38164 CT 38165 || Sbjct 258 CT 259 >seq14474 Length=2471489 Score = 86.0 bits (94), Expect = 6e-12 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 37984 GGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACC 38043 || ||||| ||| ||| |||||| ||||| || | | ||||||||||||||||| | Sbjct 1696410 GGGCACATAAGACTCCACATTTCATCCTTTTCAACCCTCTGCATAAATAAATCAGGTATC 1696469 Query 38044 CATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAG 38103 || |||||| ||| |||||| | | | | ||| || || || |||||| | || Sbjct 1696470 CACAATGCATAAAACAAATCTCTTGCACGTTGTTCCTCTTTGCCAGTGTTCTTTTTCAAA 1696529 Query 38104 CTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGT 38163 || || || || |||||||| ||||| || |||| ||||| | | ||||| || Sbjct 1696530 TCAAGGAAGTCAAAAATATCAGCATGCCAAGGCTCTAAGTAAATAGCAAAAGCTCCAGGC 1696589 Query 38164 CT 38165 || Sbjct 1696590 CT 1696591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468427973493520