Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasteatoda_20tepidariorum_20[refseq_20GCF_5F000365465.2_202017-04- 14] 16,533 sequences; 1,445,396,121 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq14474 141 1e-28 seq546 113 6e-20 >seq14474 Length=2471489 Score = 141 bits (156), Expect = 1e-28 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 65415 CCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCA 65474 ||| ||||||| ||||||| ||| ||| || ||||||||||| || ||||||||||| Sbjct 1674016 CCTTCATATGTCTCGTATGTTCCCAACTTTTCGGCTAGTTCACAGCTAGCCTCTAATGCG 1674075 Query 65475 CCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAAT 65534 | ||||||||||||| || || | |||||| | ||| ||||| ||||||||| Sbjct 1674076 GCAAAATAAATGGTTTCAAAAATGTCTGCATTTAGCTTTTGAGCTTCTTCACTATCAAAT 1674135 Query 65535 GGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTA 65594 ||||| | | |||||||| || || ||||| |||||||| || || || || || ||| Sbjct 1674136 GGATATCTCATCAGAATAAAAGCATCCGCTAAACCTTGAACTCCTATTCCAATGGGCCTA 1674195 Query 65595 TGTCTCTTATTAGAGATTTCAGC 65617 || | ||||| || |||| || Sbjct 1674196 TGACGTTTATTTGATTTTTCCGC 1674218 Score = 125 bits (138), Expect = 9e-24 Identities = 108/134 (81%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240 || || ||||| ||||| || ||||| | |||||| |||||||| || || ||||| | Sbjct 1672514 ACCTGGAATTCACCAGATAAGACTCTTCTAGTGTAGATATTACTTGTGTAAGGTTCAATT 1672573 Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300 || ||||||||||| | ||| ||||| ||||||||||| |||||||| || | || ||| Sbjct 1672574 GATTCATTATTTCCAAGAATCTGAGCTGTTGATGCAGTTGGCATAGGCGCTAATAACAAA 1672633 Query 65301 CTATTTCTAAGACC 65314 |||||||||| ||| Sbjct 1672634 CTATTTCTAACACC 1672647 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 64907 CCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATT 64966 ||| ||||| |||||||| || || | || |||| | || || || ||||| | ||| Sbjct 1671512 CCAGCCGTAGAAATGCATGCTTGTGATCTTTCCATAATTAGGTTCAGCAATATGCACATT 1671571 Query 64967 CATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTT 65026 || || || |||||||| ||| | ||||| || || ||||||||||| | || | || Sbjct 1671572 CAAGGACTGGCTTTGATCAATGTAAGCTCCTCTATCAGCAGCCATTTTCAATATATTTTT 1671631 Query 65027 TTGTGGAATTTCCCAAATAGT 65047 || ||||||||||| | ||| Sbjct 1671632 CTGAGGAATTTCCCAGACAGT 1671652 Score = 84.2 bits (92), Expect = 3e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 66801 CTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATG 66860 |||||| ||| || ||||||||||| ||||| || | || |||| ||| |||| ||| Sbjct 1721251 CTAAATGTTTTCTTCGTTTCTTTGTGCAGATTGGAGATAGCAATTCGAGCAGCTAGAATA 1721310 Query 66861 GCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAAT 66920 ||||| || ||||| | |||||| ||| || || ||||| || || || | || | | Sbjct 1721311 GCATAGTCTGGATGCTTTGTAGTCATAGTAGCAGCAATTTCAGCAGCTAGGTTATCTAGT 1721370 Query 66921 TCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAG 66966 || || || || || ||| ||| | || || || ||||||| Sbjct 1721371 TCAACTGTAGTGACACCAGGATACAAGCCACTTATTACTTTCATAG 1721416 >seq546 Length=398126 Score = 113 bits (124), Expect = 6e-20 Identities = 103/130 (79%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 36408 TTTCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGT 36467 ||||| | | |||||||||||||||||||| || | || |||||||| ||||| | | Sbjct 245626 TTTCAGTTTTGTCTTTAACATATGTATCAATTAACAAGCTGTACATTTCTGAATGGACAT 245567 Query 36468 TTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTAC 36527 | ||||| || |||||||| || || |||||||| ||||| |||| ||| |||||| || Sbjct 245566 TCTCAATAGCTATTTGAAAACCATAAAAACATCTGGCCTCTGTAACCTGAACTTCTTGAC 245507 Query 36528 AAAATCGTTC 36537 |||||||| Sbjct 245506 TGAATCGTTC 245497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658036780363720