Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasteatoda_20tepidariorum_20[refseq_20GCF_5F000365465.2_202017-04- 14] 16,533 sequences; 1,445,396,121 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq14474 145 1e-29 seq546 134 2e-26 >seq14474 Length=2471489 Score = 145 bits (160), Expect = 1e-29 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 71377 CCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCT 71436 ||| ||||||| ||||||| ||| ||||||||||||||||| || ||||||||||| Sbjct 1674016 CCTTCATATGTCTCGTATGTTCCCAACTTTTCGGCTAGTTCACAGCTAGCCTCTAATGCG 1674075 Query 71437 CCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAAT 71496 || ||||||||||||| ||||| | ||| || | ||| ||||| ||||||||| Sbjct 1674076 GCAAAATAAATGGTTTCAAAAATGTCTGCATTTAGCTTTTGAGCTTCTTCACTATCAAAT 1674135 Query 71497 GGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTG 71556 ||||| | | |||||||| || || ||||| |||||||| || || || || || || Sbjct 1674136 GGATATCTCATCAGAATAAAAGCATCCGCTAAACCTTGAACTCCTATTCCAATGGGCCTA 1674195 Query 71557 TGTCTCTTATTAGAAATTTCAGC 71579 || | ||||| || |||| || Sbjct 1674196 TGACGTTTATTTGATTTTTCCGC 1674218 Score = 131 bits (144), Expect = 2e-25 Identities = 111/137 (81%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 71143 ACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACT 71202 || || ||||| ||||| || ||||| | |||||| |||||||| || || ||||| | | Sbjct 1672514 ACCTGGAATTCACCAGATAAGACTCTTCTAGTGTAGATATTACTTGTGTAAGGTTCAATT 1672573 Query 71203 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGA 71262 || ||||||||||| | ||| ||||| ||||||||||| |||||||| || | || | | Sbjct 1672574 GATTCATTATTTCCAAGAATCTGAGCTGTTGATGCAGTTGGCATAGGCGCTAATAACAAA 1672633 Query 71263 CTATTTCTAAGACCATG 71279 |||||||||| |||||| Sbjct 1672634 CTATTTCTAACACCATG 1672650 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 70869 CCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATATT 70928 ||| ||||| |||||||| || || | || ||| |||| || || || || | ||| Sbjct 1671512 CCAGCCGTAGAAATGCATGCTTGTGATCTTTCCATAATTAGGTTCAGCAATATGCACATT 1671571 Query 70929 CATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTT 70988 || ||||| |||||||| ||| | ||||| || || ||||||||||| | || | || Sbjct 1671572 CAAGGACTGGCTTTGATCAATGTAAGCTCCTCTATCAGCAGCCATTTTCAATATATTTTT 1671631 Query 70989 TTGTGGAATTTCCCAAATAGT 71009 || ||||||||||| | ||| Sbjct 1671632 CTGAGGAATTTCCCAGACAGT 1671652 >seq546 Length=398126 Score = 134 bits (148), Expect = 2e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 42449 AAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 42508 || ||||| || || ||||| || || || |||||||| || || | ||| || || Sbjct 243757 AAGTTTTCATTTACAATTCCATCGCTTGCAGCAAAAAAGGCTAAGATATGAGAGATGAAG 243698 Query 42509 TATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGATATCTTTAGATATATCTACTTCT 42568 | |||||| || | | | | ||| | ||| ||| | ||||| |||| |||||||||| Sbjct 243697 TGTTTTTCTTCTGATTTCAGTTTTTCCCAGTCAGAAAAGTCTTTTGATAGATCTACTTCT 243638 Query 42569 TCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGA 42628 ||||| ||||| || || || ||||| || |||||||| | ||| ||||| ||||||| | Sbjct 243637 TCTACGGTCCAGAAAGACGCCTCTGCTTTCTTATACATCTGCCACATATCTTGATATTCA 243578 Query 42629 ATTGGGAAAATAACAAATCTATTTGGATT 42657 || || || |||||||| ||| ||||| Sbjct 243577 ATGGGAAAGATAACAAACCTACGGGGATT 243549 Score = 118 bits (130), Expect = 1e-21 Identities = 104/130 (80%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 42315 TTTCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGT 42374 ||||| | | ||||||||||||||||| || || | || |||||||||||||| | | Sbjct 245626 TTTCAGTTTTGTCTTTAACATATGTATCAATTAACAAGCTGTACATTTCTGAATGGACAT 245567 Query 42375 TTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTAC 42434 | ||||| || || ||||| || || |||||||||||||| |||||||| |||||| || Sbjct 245566 TCTCAATAGCTATTTGAAAACCATAAAAACATCTGGCCTCTGTAACCTGAACTTCTTGAC 245507 Query 42435 AAAATCGTTC 42444 |||||||| Sbjct 245506 TGAATCGTTC 245497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671000500695080