Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasteatoda_20tepidariorum_20[refseq_20GCF_5F000365465.2_202017-04- 14] 16,533 sequences; 1,445,396,121 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq13430 181 2e-41 seq6871 159 5e-35 seq884 159 5e-35 seq8976 116 6e-22 seq781 104 4e-18 seq11716 86.0 1e-12 >seq13430 Length=8476887 Score = 181 bits (200), Expect = 2e-41 Identities = 204/273 (75%), Gaps = 0/273 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||| || ||||| | | ||| ||||||| || |||||||| |||||||| ||||| Sbjct 3880079 CGCTAAACGACATCGTAAAGTACTTAGAGATAATATTCAAGGAATAACCAAGCCTGCTAT 3880138 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||| ||||||||||| || || |||||| | ||||| ||| | || ||||| | Sbjct 3880139 CCGTCGTCTTGCTCGTCGTGGCGGTGTTAAGCGTATATCTGGCTTGATATACGAAGAAAC 3880198 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || ||||| | || || | | || || | ||||||| | |||||| || Sbjct 3880199 CCGTGGAGTGTTGAAAGTGTTTCTGGAAAATGTAATTCGTGATGCTGTAACCTATACTGA 3880258 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| |||||||| || || || || | ||||| | || ||||| |||||||| ||||| Sbjct 3880259 GCATGCTAAACGCAAAACCGTTACAGCAATGGACGTAGTTTATGCGTTGAAACGACAAGG 3880318 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTTC 16704 ||||| | || ||||| || ||| | |||| Sbjct 3880319 CCGTACTCTCTACGGTTTCGGTGGTTGAACTTC 3880351 >seq6871 Length=6677 Score = 159 bits (176), Expect = 5e-35 Identities = 197/268 (74%), Gaps = 1/268 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||| | | | || || ||| ||||||| ||||||||||| || ||| Sbjct 3938 GCCAAGCGTCATCGTTAAGTTTTGCGTGAAAACGTCCAAGGTATCACCAAGCCTGCCATC 3997 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 | ||||| ||||| || ||||||||||||||| |||| ||| | |||| ||||| | Sbjct 3998 AGACGTCTAGCTCGACGAGGTGGAGTCAAGCGTATCTCCGGACTCATCTACGAAGAAACC 4057 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCAC-TATACCGA 16611 | | ||| | || | ||||| ||| |||||||| || ||| || || || ||||| Sbjct 4058 AGAGGAGTTCTCAAACTTTTCCTTGAGAACGTTATCCGGGACGCTGTCAACTTACACCGA 4117 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||||| | ||||| ||||| ||||||| | || || || | || || || || Sbjct 4118 GCACGCTAAGAGGAAGACAGTCACTGCCATGGACGTAGTGTACGCTCTCAAGCGACAGGG 4177 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | | || ||||||||| ||||| Sbjct 4178 ACGCACGCTATACGGTTTTGGAGGTTAA 4205 >seq884 Length=2754898 Score = 159 bits (176), Expect = 5e-35 Identities = 197/268 (74%), Gaps = 1/268 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||| | | | || || ||| ||||||| ||||||||||| || ||| Sbjct 191413 GCCAAGCGTCATCGTTAAGTTTTGCGTGAAAACGTCCAAGGTATCACCAAGCCTGCCATC 191472 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 | ||||| ||||| || ||||||||||||||| |||| ||| | |||| ||||| | Sbjct 191473 AGACGTCTAGCTCGACGAGGTGGAGTCAAGCGTATCTCCGGACTCATCTACGAAGAAACC 191532 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCAC-TATACCGA 16611 | | ||| | || | ||||| ||| |||||||| || ||| || || || ||||| Sbjct 191533 AGAGGAGTTCTCAAACTTTTCCTTGAGAACGTTATCCGGGACGCTGTCAACTTACACCGA 191592 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||||| | ||||| ||||| ||||||| | || || || | || || || || Sbjct 191593 GCACGCTAAGAGGAAGACAGTCACTGCCATGGACGTAGTGTACGCTCTCAAGCGACAGGG 191652 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | | || ||||||||| ||||| Sbjct 191653 ACGCACGCTATACGGTTTTGGAGGTTAA 191680 Score = 149 bits (164), Expect = 1e-31 Identities = 195/268 (73%), Gaps = 8/268 (3%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||| | | | || || ||||||||||| ||||||||||| || ||| Sbjct 87045 GCCAAGCGTCATCGTTAAGTTTTGCGTGAAAACATCCAAGGTATCACCAAGCCTGCCATC 86986 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 | ||||| ||||| || ||||| ||||||||| |||| ||| | |||| |||||| Sbjct 86985 AGACGTCTAGCTCGACGAGGTGGTGTCAAGCGTATCTCCGGACTCATCTACGAAGAG--- 86929 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCAC-TATACCGA 16611 || ||| | || | ||||| ||| |||||||| || ||| || || || ||||| Sbjct 86928 ---GA-GTTCTCAAACTTTTCCTTGAGAACGTTATCCGGGACGCTGTCAACTTACACCGA 86873 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||| |||| | ||||| ||||| ||||| | | || || || | || || || || Sbjct 86872 GCACACTAAGAGGAAGACCGTCACTGCCATGAACGTAGTGTACGCTCTCAAGCGACAGGG 86813 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | | || ||||||||| ||||| Sbjct 86812 ACGCACGCTATACGGTTTTGGAGGTTAA 86785 Score = 107 bits (118), Expect = 3e-19 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 16508 CGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAG 16567 || ||||||||||||||| |||||||| | |||| ||||| | | | ||| | || Sbjct 126742 CGAGGTGGAGTCAAGCGTATCTCTGGACTTATCTACGAAGAAACCAGAGGAGTTCTCAAA 126683 Query 16568 ATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAG 16627 | ||||| ||| |||||||| || ||| || || ||||||||||| || | ||| Sbjct 126682 GTTTTCCTTGAGAACGTTATCCGGGACGCTGTCACTTACACCGAGCACGCAAAGGGGAAG 126623 Query 16628 ACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGT 16687 || ||||| ||||||| | ||||| || | || || || || || | | | || ||| Sbjct 126622 ACCGTCACTGCCATGGACGTAGTCTACGCTCTCAAGCGACAGGGACGCACGCTATACGGT 126563 Query 16688 TTTGGAAGTTAA 16699 |||||| ||||| Sbjct 126562 TTTGGAGGTTAA 126551 >seq8976 Length=83394 Score = 116 bits (128), Expect = 6e-22 Identities = 94/114 (82%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||| | | | | || |||||||||||||| ||||||||||| || ||| Sbjct 76723 GCCAAGCGTCATCGAAAAGTTTTGCGTGATAACATCCAAGGTATCACCAAGCCTGCCATC 76664 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAA 16546 | ||||||||||| || ||||||||||||||| ||||||| || |||| ||| Sbjct 76663 AGACGTCTGGCTCGACGAGGTGGAGTCAAGCGTATCTCTGGTTTAATCTACGAA 76610 >seq781 Length=2016891 Score = 104 bits (114), Expect = 4e-18 Identities = 153/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 16437 AGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTC 16496 |||| ||||| | | | | | |||||||||||||| |||||||| | || ||| | | Sbjct 1527775 AGCGGCATCGTAAAATTTTGTGTGATAACATCCAAGGTATCACCAATTCTGCCATCAGAC 1527716 Query 16497 GTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTG 16556 |||| |||| || |||| | ||||||| ||||||| | |||||||||| | | | Sbjct 1527715 GTCTAACTCGACGAGGTGTATTCAAGCGAATCTCTGGTCTCATCTATGAAGAAACCAGAG 1527656 Query 16557 ATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACG 16616 ||| | || | ||||| ||| |||||||| ||||||| || | |||||||||| Sbjct 1527655 GAGTTCTCAAAGTTTTCCTTCAGAACGTTATCCGTGATGCTGTCACATTCACCGAGCACG 1527596 Query 16617 CTAAACGTAAGACTGTCACCTCCATGGATATCGTCTA 16653 || | || || || || |||||| || || || Sbjct 1527595 TAAAGAGGAAAACAGTGACTGTCATGGACATAGTGTA 1527559 >seq11716 Length=14253588 Score = 86.0 bits (94), Expect = 1e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 16571 TTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACT 16630 ||||| ||| |||||||| ||| ||| | || ||||||||||| || | ||||| Sbjct 2791339 TTCCTTGAGAACGTTATCCGTGACGCTGTTACTTACACCGAGCACGCCAAGAGGAAGACC 2791280 Query 16631 GTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTT 16690 ||||| ||||||| | || || || ||||||||||||| |||| | || ||||| Sbjct 2791279 GTCACTGCCATGGACGTAGTGTACGCTCTGAAACGTCAAGGACGTACTTTGTACTGTTTT 2791220 Query 16691 GGAAGTTAATCTTCT 16705 |||| |||| |||| Sbjct 2791219 GGAAATTAAATTTCT 2791205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79060083762369