Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasteatoda_20tepidariorum_20[refseq_20GCF_5F000365465.2_202017-04- 14] 16,533 sequences; 1,445,396,121 total letters Query= NC_006658.1 Length=30655 Score E Sequences producing significant alignments: (Bits) Value seq6337 147 4e-31 seq2603 123 5e-24 seq6793 105 1e-18 seq7520 95.1 2e-15 seq2939 82.4 1e-11 >seq6337 Length=2532618 Score = 147 bits (162), Expect = 4e-31 Identities = 632/982 (64%), Gaps = 49/982 (5%) Strand=Plus/Plus Query 3742 AAGGGTGTATTCCCGTATGAGTACATTGACAGTATTGACAGACTAGACGAGACA-CAGTT 3800 |||||||| | ||| ||||| ||||| | || | || | | | || ||||| || | Sbjct 2379820 AAGGGTGTTTACCCTTATGATTACATGAATTGTGTAGAAAAATTTGATGAGACGTCACTC 2379879 Query 3801 ACCTGACCAGGATTCATTTTATTCAAAATTA-ACTAATTCTACCA-TTTCCGATGACGAT 3858 ||| | || || |||||| | | ||| || || | |||| |||||||| | ||| Sbjct 2379880 CCCTCAAAAG-ATGCATTTTTTAACCACTTAGACGAAGT--ACCAATTTCCGATCAGGAT 2379936 Query 3859 TATGCTTTTGCTCAAGTAGTCTGGAACGAGTTTAAAATCAATACGCTTGGAGAGTACTCG 3918 |||| |||| || || ||||| ||||| || || || | || || || ||| Sbjct 2379937 TATGAGCATGCTAAACGCGTGTGGAATACTTTTAATATTAAAACAATGGGTGAATATTCG 2379996 Query 3919 GACTTATACTTAAAGACTGATGTCCTTCTCTTGACTGATGTCTTTGAAAACTTTAG--AC 3976 || |||| ||||| |||||||| || | | || ||| | ||| |||| | | | Sbjct 2379997 GATCTATATTTAAAAACTGATGTTCTGTTGTCAACGGATATTTTTCAAAATATCCGGAAA 2380056 Query 3977 GTAGTTGTTTCAAGACATACAATTTAGACGCACTACACTT-TTATACAGCACCAGGTCTT 4035 || |||||| || ||||| | |||||| | || | | || ||| | || ||||| Sbjct 2380057 GT--TTGTTTAAAAACATATCACTTAGACCC-CTCCTGGTATTTTACTTCCCCTGGTCTC 2380113 Query 4036 TCGAACGCTGCAATGTTAAAGCATACTGAAGTAGAACTTGAACTGTTAACTGATCCTGAG 4095 || | ||||||||||||| || || ||| || | || ||||||| ||| ||| Sbjct 2380114 TCTTGGGATGCAATGTTAAAGATGACAGATGTAAAAATAGAGCTGTTAAAAGATTATGAT 2380173 Query 4096 ATGCTTCTTTTCATTGAAAAGGGTGTTCGCGGTGGGGTATCGATGTGTGCTAATAGACAT 4155 ||||||||||| |||| || || | | || || | || || | | ||| || Sbjct 2380174 ATGCTTCTTTTTGTTGAGAAAGGAATAAGGGGCGGAATCTCCCAATGCTCCCACAGATAT 2380233 Query 4156 GCTGAAGCTAACAACCGGTATATGGGCAAAGATTTTGATTCAAACAACCCCGAAACATAC 4215 | |||| || || | |||||| | |||| |||| ||||| || || ||| Sbjct 2380234 GGAAAAGCAAATAATCCCTATATGCTC---GATTATGATGCAAACTTACCAACAAATTAC 2380290 Query 4216 CTGATGTACTATGATGTAAATAATTTGTATGGCGCAGCGATG------AGTATGTCTTTA 4269 || | || | || | ||||||| | || || || ||| || || ||||| Sbjct 2380291 TTGTTATATTTGGACGCAAATAATCTCTACGGGTGGGCTATGTCCCAAAGCTTGCCTTTA 2380350 Query 4270 CCAAAGGGTAAATTTGAATGGGTTGAAAATGTAGAT---GATGTA-GATCAGTTTTTCAA 4325 || | ||| ||||| | | || ||| |||||| || | ||| || Sbjct 2380351 A------GTGATTTTAAATGGATAAATCCTGCTGATATTGATGTAAGAGAAATTT--CA- 2380401 Query 4326 TGATGATGAGAGTG---TAGGCTACATCCTTGAAGTAGATCTACACTATCCTGAGAATTT 4382 ||||| ||| |||| ||||| || || || ||||| |||||| | || || Sbjct 2380402 ----GATGAAAGTCCTTTAGGATACATTCTCGAGGTGGATCTGATTTATCCTCAAAACTT 2380457 Query 4383 ACATGATCTACACAAAGATCTACCTTTATGCCCAGAACATTTTGTACCACCTGGTAGCAA 4442 ||| ||| || |||||| || | || ||| | || || ||||| | | Sbjct 2380458 ACACGATGATCATTCAGATCTTCCACTGGCACCTGAAAGTAGGGTTCCTCCTGGATGTAG 2380517 Query 4443 GCAACAAAAACTCACGACAACTCTGTACGATAAAAATAATTATGTTATTCACTATAAAAA 4502 || | ||| | || || || | |||||||||||||| || || ||||| | ||| Sbjct 2380518 AGAAAGACGACTTATCACCACACTATTTGATAAAAATAATTACGTCATGCACTACAGAAA 2380577 Query 4503 TTTGAAACAATGTTTAGATTTAGGTTTAGTTCTTAAGAAAATACACCTAGTCTTGAAATT 4562 ||| ||||||||||||| ||||| | || || ||| | || ||| || |||| Sbjct 2380578 TTTAAAACAATGTTTAGCCTTAGGAATGAAACTAAAAAAAGTTCATAGAGTATTAGAATT 2380637 Query 4563 TGAGCAATCAGACTGGCTCAAATCATATATCGATAAAAATACCGCATGCCGAAAACT--- 4619 | | ||| | |||| | ||| | ||||| || ||| | | ||| |||| | Sbjct 2380638 TAAACAAGCCCCCTGGTTAAAAACTTATATAGACCTAAACA-CACAT---GAAAGATCCA 2380693 Query 4620 -AGCTAAGAATGAGTTCGaaaaaaaCTTTTATAAATTAATGAATAATGCGGTTTTTGGAA 4678 |||||||| || ||| ||| ||| || || || ||||||||||| | ||||||| | Sbjct 2380694 CAGCTAAGAGCGAATTCCAAAGAAATTTCTACAAGTTAATGAATAACTCTATTTTTGGTA 2380753 Query 4679 AGACGATGGAGAATGTACGAAA 4700 | || ||||| ||| || |||| Sbjct 2380754 AAACTATGGAAAATATAAGAAA 2380775 >seq2603 Length=7028669 Score = 123 bits (136), Expect = 5e-24 Identities = 173/243 (71%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 4459 ACAACTCTGTACGATAAAAATAATTATGTTATTCACTATAAAAATTTGAAACAATGTTTA 4518 || ||| || | || ||| | || ||||| | || || |||| | ||||||| | | Sbjct 6446633 ACTACTTTGAATGACAAAGAAAAATATGTCTTGCATTACCGAAATCTAAAACAATTTGTT 6446574 Query 4519 GATTTAGGTTTAGTTCTTAAGAAAATACACCTAGTCTTGAAATTTGAGCAATCAGACTGG 4578 | || ||||||||| | || | ||| |||| || ||| |||||||||||||| ||| Sbjct 6446573 AAATTCGGTTTAGTTATAAAAACAATTCACCGCGTTTTGGAATTTGAGCAATCACCTTGG 6446514 Query 4579 CTCAAATCATATATCGATAAAAATACCGCATGCCGAAAACTAGCTAAGAATGAGTTCGaa 4638 || || |||||| ||| ||| || | ||| || ||| | ||||| ||| || Sbjct 6446513 CTTAAGGAATATATTGATTTAAACACTCAACTCCGTCAATCAGCGACAAATGATTTCCAA 6446454 Query 4639 aaaaaCTTTTATAAATTAATGAATAATGCGGTTTTTGGAAAGACGATGGAGAATGTACGA 4698 |||| ||||||||| |||||||||| || || ||||| ||||| ||| | ||| | || Sbjct 6446453 AAAATTTTTTATAAACTAATGAATAACGCAGTCTTTGGTAAGACAATGTAAAATATTCGC 6446394 Query 4699 AAA 4701 ||| Sbjct 6446393 AAA 6446391 Score = 80.6 bits (88), Expect = 5e-11 Identities = 97/132 (73%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 4568 AATCAGACTGGCTCAAATCATATATCGATAAAAATACCGCATGCCGAAAACTAGCTAAGA 4627 ||||| |||||| ||| || ||||| | ||||| || |||| |||| | Sbjct 6988445 AATCACCCTGGCTTAAAAATTACATCGACTATAATACTAAATTGCGAACTGAAGCTGTAA 6988386 Query 4628 ATGAGTTCGaaaaaaaCTTTTATAAATTAATGAATAATGCGGTTTTTGGAAAGACGATGG 4687 |||| ||| ||||| | | ||||||| | ||||| ||| |||||||||||||||||| Sbjct 6988385 ATGACTTCCAAAAAGATTATTATAAACTTATGAACAATAGCATTTTTGGAAAGACGATGG 6988326 Query 4688 AGAATGTACGAA 4699 | |||||||||| Sbjct 6988325 AAAATGTACGAA 6988314 >seq6793 Length=4390623 Score = 105 bits (116), Expect = 1e-18 Identities = 166/233 (71%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 4471 GATAAAAATAATTATGTTATTCACTATAAAAATTTGAAACAATGTTTAGATTTAGGTTTA 4530 ||||||||||||||||| || ||| ||| |||||| |||||||| |||| |||| | Sbjct 3554784 GATAAAAATAATTATGTCATGCACAATAGAAATTTAAAACAATGCTTAGCCTTAGAAATG 3554843 Query 4531 GTTCTTAAGAAAATACACCTAGTCTTGAAATTTGAGCAATCAGACTGGCTCAAATCATAT 4590 || || ||| | || ||| || ||||| | ||| | |||| | ||| | ||| Sbjct 3554844 AAACTAAAAAAAGTTCATAGAGTTTTAGAATTTAAACAAGCCCCCTGGTTAAAAACTTAT 3554903 Query 4591 ATCGATAAAAATACCGCATGCCGAA-AACTA--GCTAAGAATGAGTTCGaaaaaaaCTTT 4647 || || ||| | | |||| ||| | | | ||||||| || ||| ||| ||| || Sbjct 3554904 ATAGACCTAAACA-CACATG--GAAGATCCACGGCTAAGAGCGAATTCCAAAGAAATTTC 3554960 Query 4648 TATAAATTAATGAATAATGCGGTTTTTGGAAAGACGATGGAGAATGTACGAAA 4700 || || ||||||||||| | ||||||| || || ||||||||| || |||| Sbjct 3554961 TACAAGTTAATGAATAACTCTATTTTTGGTAAAACTATGGAGAATATAAGAAA 3555013 >seq7520 Length=537039 Score = 95.1 bits (104), Expect = 2e-15 Identities = 188/276 (68%), Gaps = 2/276 (1%) Strand=Plus/Plus Query 4427 TACCACCTGGTAGCAAGCAACAAAAACTCACGACAACTCTGTACGATAAAAATAATTATG 4486 ||||||||||| ||||| | ||| ||| ||||| || || |||||| | || |||| Sbjct 310226 TACCACCTGGTTGCAAGGATAAAAGACTGCTTACAACACTTTATGATAAAGAAAAATATG 310285 Query 4487 TTATTCACTATAAAAATTTGAAACAATGTTTAGATTTAGGTTTAGTTCTTAAGAAAATAC 4546 | |||||||| ||||| ||| || | | | ||| | || | || || || | Sbjct 310286 TCCTTCACTATCGCAATTTAAAATTATATATCCAACAAGGCCTTATTTTGAAAAAGATTC 310345 Query 4547 ACCTAGTCTTGAAATTTGAGCAATCAGACTGGCTCAAATCATATATCGATAAAAATAC-C 4605 || || | |||| |||| || ||| | ||| |||||| ||| ||| | Sbjct 310346 ACAGGGTTCTTCAATTCAAGCAGTCTCCGTGGTTAAAAGAATATATTGATTTGAATTCTA 310405 Query 4606 GCATGCCGAAAACTAGCTAAGAATGAGTTCGaaaaaaaCTTTTATAAATTAATGAATAAT 4665 | | | |||| || || || || || || |||||| |||| |||||| ||||| ||| Sbjct 310406 ACCTCCGGAAAGCT-GCCAAAAACGAATTTGAAAAATCGTTTTTTAAATTGATGAACAAT 310464 Query 4666 GCGGTTTTTGGAAAGACGATGGAGAATGTACGAAAA 4701 || || || || || |||||||| ||| |||||||| Sbjct 310465 GCCGTATTCGGCAAAACGATGGAAAATATACGAAAA 310500 >seq2939 Length=27004647 Score = 82.4 bits (90), Expect = 1e-11 Identities = 174/258 (67%), Gaps = 5/258 (2%) Strand=Plus/Minus Query 4446 ACAAAA--ACTCACGACAACTCTGTACGATAAAAATAATTATGTTATTCACTATAAAAAT 4503 |||||| ||||||||| || || | ||| | ||| ||| |||| |||| | Sbjct 26890698 ACAAAATTACTCACGACC---CTATATAACAAAGAACATTCTGTGGTTCATTATAGGGTT 26890642 Query 4504 TTGAAACAATGTTTAGATTTAGGTTTAGTTCTTAAGAAAATACACCTAGTCTTGAAATTT 4563 | |||||||| |||| | |||| ||| | ||| | || ||| || ||||| Sbjct 26890641 TCGAAACAATTTTTACAAATAGGCACTAAACTTGAAAAAGTCCATAGAGTTTTACAATTT 26890582 Query 4564 GAGCAATCAGACTGGCTCAAATCATATATCGATAAAAATACCGCATGCCGAAAACTAGCT 4623 ||| || ||| | || ||||||| ||| ||| || | | |||| | ||| Sbjct 26890581 TTTCAAGCACCTTGGATGAAGACATATATAGATTTAAACACAGAACTGCGAACAAAAGCA 26890522 Query 4624 AAGAATGAGTTCGaaaaaaaCTTTTATAAATTAATGAATAATGCGGTTTTTGGAAAGACG 4683 | |||||||| |||||| | ||| ||||| | |||||||| | || ||||||||||| Sbjct 26890521 ACTAATGAGTTTGAAAAAGAATTTCATAAACTCATGAATAACTCAGTATTTGGAAAGACA 26890462 Query 4684 ATGGAGAATGTACGAAAA 4701 ||||| ||| | ||||| Sbjct 26890461 ATGGAAAATATTAGAAAA 26890444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97955164747282