Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasteatoda_20tepidariorum_20[refseq_20GCF_5F000365465.2_202017-04- 14] 16,533 sequences; 1,445,396,121 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq546 107 2e-18 seq11251 82.4 8e-11 >seq546 Length=398126 Score = 107 bits (118), Expect = 2e-18 Identities = 120/157 (76%), Gaps = 5/157 (3%) Strand=Plus/Minus Query 21115 AAAAATATTTAT-TTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACA 21173 ||||| || || ||||||||| ||||| | | |||||||| ||||||||| ||||||| Sbjct 257365 AAAAACATATAAATTAAAAATCTGCATCGAGGGTGAAAACATGATCTTCTTTGTTTGACA 257306 Query 21174 TAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCA 21233 ||| ||| ||||| || || | |||| | || || || ||||| || || || || | Sbjct 257305 TAACTCCACACTTTTGGTATTCTCCAACTTTCTTCTCAAAGAAATTGGTTTTGCCCTCAA 257246 Query 21234 A--TGATATAGATTCCATAAAATCAAATGGATTTTCA 21268 |||||| |||||| |||||||||||||||||| Sbjct 257245 GACTGATATG--TTCCATGAAATCAAATGGATTTTCA 257211 Score = 98.7 bits (108), Expect = 1e-15 Identities = 143/202 (71%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 21861 CCAAGTTTTCATTTACTATTCCATCACTGGCGGCAAAAAATGCCAATATATTTTTTATAA 21920 |||||||||||||||| |||||||| || || |||||||| || || |||| || | Sbjct 243759 CCAAGTTTTCATTTACAATTCCATCGCTTGCAGCAAAAAAGGCTAAGATATGAGAGATGA 243700 Query 21921 AATATCGTTCGTTATCTGTTAATTTTTTCCAATCTAATAAATCTTTTGATAAATCTACTT 21980 | | | ||| | | | | ||||| ||| || | || |||||||||| |||||||| Sbjct 243699 AGTGTTTTTCTTCTGATTTCAGTTTTTCCCAGTCAGAAAAGTCTTTTGATAGATCTACTT 243640 Query 21981 CTTCAGTTGTCCAAAAGCTAGCAATAGCCTTTTTATACATAATCCAGATATCATTATATA 22040 |||| ||||| || || || || |||||||| ||| ||||| | |||| Sbjct 243639 CTTCTACGGTCCAGAAAGACGCCTCTGCTTTCTTATACATCTGCCACATATCTTGATATT 243580 Query 22041 TTATTGGAAATATTACAAACCT 22062 || ||||| || |||||||| Sbjct 243579 CAATGGGAAAGATAACAAACCT 243558 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 21500 TCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTT 21559 ||||| || || |||||||||||| ||||| | ||| ||||| | |||||||| || Sbjct 248754 TCATCTCTGCTGATTAATTCATTACTGAATGTGAGACCAGGCATAAGACCTCTCTTCTTC 248695 Query 21560 AACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCA 21619 ||||| || || || ||||| | || || || || ||||| || ||||| ||||||||| Sbjct 248694 AACCAGAAAATAGATGCAAAGGAGCCAGAGAAAAATATGCCTTCCACGGCTGCAAATGCA 248635 Query 21620 ACTAATCGTTCACC 21633 || | || ||| || Sbjct 248634 ACAACTCTTTCTCC 248621 >seq11251 Length=1294589 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 65614 TTTCCAGATATTGTTAATTTTTCGGAATCTATGGCAAATATTGGTAAAATTGTTATTATC 65673 ||||| |||||||||| ||||| ||| |||||||| | ||| |||||||||||||| Sbjct 728367 TTTCCTGATATTGTTACATTTTCTGAAGAAATGGCAAACAGTGGAAAAATTGTTATTATT 728426 Query 65674 GCCGCCTTAGACGGTACTTATAAAAGAA 65701 || || || || || |||||| |||||| Sbjct 728427 GCTGCTTTGGATGGAACTTATCAAAGAA 728454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531790876050920