Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasteatoda_20tepidariorum_20[refseq_20GCF_5F000365465.2_202017-04- 14] 16,533 sequences; 1,445,396,121 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq4472 138 1e-27 seq435 113 4e-20 >seq4472 Length=7509737 Score = 138 bits (152), Expect = 1e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||||||||| | ||||| || ||||||||||| ||| | || || | || || ||| | Sbjct 668721 CAAAATGCAGATTTTTGTTAAGACATTAACTGGCAAAACTATCACACTAGAGGTTGAGCC 668662 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 | ||||| || ||| | || ||| |||||| ||||||||||| || || || || Sbjct 668661 TAGTGACACGATTGAGAATGTGAAAGCAAAGATCCAGGACAAAGAAGGAATTCCACCTGA 668602 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 ||| ||||| |||| | || || |||||| | ||||||| | | | | || || Sbjct 668601 TCAGCAGAGGTTGATCTTCGCTGGTAAGCAATTGGAAGATGGTCGTACCCTGTCTGACTA 668542 Query 24167 TAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || ||||| |||||||||||| |||| || || |||||||||||||||| Sbjct 668541 CAATATTCAGAAAGAATCTACACTTCACTTGGTTCTAAGATTGAGAGGAGG 668491 Score = 118 bits (130), Expect = 9e-22 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| ||||| | || |||||| | ||||| | ||||| || | | Sbjct 667349 ATGCAAATATTTGTCAAAACTCTGACAGGAAAAACTATTACACTAGAAGTTGAACCAAGT 667290 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||| || | || ||| || ||| || || ||||| || || ||||||||| Sbjct 667289 GATACCATAGAAAATGTGAAAGCTAAAATTCAAGATAAGGAAGGTATTCCACCCGATCAA 667230 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | ||||||| | || ||||| || ||||||| | ||| | || ||||| ||| Sbjct 667229 CAGCGTCTGATTTTTGCTGGTAAGCAGCTTGAAGATGGCCGAACCCTCTCAGATTACAAC 667170 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAG 24205 || ||||||||||||||| | ||| | || || || Sbjct 667169 ATCCAAAAAGAATCTACACTCCATCTGGTTTTGAG 667135 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | ||||| ||||| ||||| ||||| | || || | ||||| ||| | | Sbjct 667578 AATGCAAATTTTTGTGAAAACTTTAACCGGAAAGACCATAACTTTAGAAGTAGAGCCTAG 667519 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || || || || | || ||| ||| ||| || || |||||||| ||||| ||||| Sbjct 667518 TGATACAATTGAAAATGTGAAAGCAAAAATTCAAGATAAGGAAGGCATCCCTCCAGATCA 667459 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| || |||||| || || ||||| | ||||||| |||| | |||||| || Sbjct 667458 ACAAAGGTTGATTTTCGCTGGTAAGCAGTTAGAAGATGGAAGAACATTGTCCGATTACAA 667399 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || ||||||||||| || | ||||| || |||||||| | || || Sbjct 667398 TATCCAAAAAGAATCCACCCTCCATTTGGTTCTAAGATTGCGTGGTGG 667351 Score = 118 bits (130), Expect = 9e-22 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| ||||| |||||||||||| | || || | ||||| ||| | | Sbjct 667805 ATGCAAATTTTTGTCAAAACTTTAACTGGAAAAACCATCACATTAGAAGTTGAGCCTAGT 667746 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | || || ||| || || ||||| || || || || || ||| Sbjct 667745 GACACCATAGAAAATGTAAAGGCAAAAATCCAAGATAAAGAGGGTATTCCACCTGACCAA 667686 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 ||| | | |||| | |||||| || || ||||||| | || | | | |||||||| Sbjct 667685 CAGCGTTTAATTTTTGCCGGCAAACAGCTTGAAGATGGGCG-TACATTATCAGATTATAA 667627 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||| |||||||||||||| | ||| | || || || ||||||||||| Sbjct 667626 CATCCAAAAAGAATCTACTTTGCATCTTGTATTGAGGCTGAGAGGAGGA 667578 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 24027 ATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGAC 24086 ||||| | ||||| ||| | || || || || | |||||| ||| ||| ||| Sbjct 666320 ATTACTTTAGAAGTTGAGCAGAGTGATACTATTGAAAATGTCAAAGCAAAAATTCAAGAC 666261 Query 24087 AAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT 24146 ||||| || || ||||||||||| ||| | || |||| | |||||||||||| |||||| Sbjct 666260 AAAGAGGGTATCCCTCCCGATCAGCAGCGTCTCATTTTTGCCGGCAAGCAACTTGAAGAT 666201 Query 24147 GACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGA 24206 | ||| | | || || ||||||||||| ||||| || ||||||| || | | Sbjct 666200 GGGCGAACCCTTTCAGACTACAACATTCAAAAGGAATCCACTCTTCATTTGGTACTCCGT 666141 Query 24207 TTGAGAGGAGGACTATAA 24224 ||||||||||| | ||| Sbjct 666140 CTGAGAGGAGGAATGTAA 666123 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| |||||||| ||||| ||| | || || | ||||| || | | Sbjct 667121 ATGCAGATATTTGTGAAAACATTGACTGGCAAAACAATAACTTTGGAAGTAGAACCTAGT 667062 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || || | || ||| || ||| || |||||||| || |||||||||||| Sbjct 667061 GATACTATTGAAAACGTAAAAGCCAAAATTCAAGATAAAGAAGGAATTCCTCCCGATCAA 667002 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 |||||||| |||| || || || || || || |||| ||| || || || ||| Sbjct 667001 CAGAGACTTATTTTCGCTGGAAAACAGCTAGAGGATGGTCGAACACTCTCAGACTACAAC 666942 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||| || || || ||| ||||| | || || || ||| | || || Sbjct 666941 ATTCAGAAGGAGTCCACACTTCATCTTGTTTTGAGGTTGCGTGGTGG 666895 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| ||||||| || | ||||| | ||||| || | | Sbjct 668261 ATGCAGATTTTTGTTAAAACTCTAACTGGGAAGACAATTACTCTAGAAGTTGAACCAAGT 668202 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || || | || ||| || || ||||||||||| || || || ||||| Sbjct 668201 GATACAATTGAAAATGTAAAAGCTAAAATCCAAGACAAAGAAGGTATTCCACCTGATCAG 668142 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | ||||||| | || || ||||| ||||||| | | | || |||||| Sbjct 668141 CAACGTCTGATTTTTGCTGGAAAACAACTTGAAGATGGTCGCACTCTTTCGGACTATAAC 668082 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||||||||||||||||| |||| || ||| | || |||||||| || Sbjct 668081 ATTCAAAAAGAATCTACACTTCACTTGGTGCTGAGGTTGAGAGGTGG 668035 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| || ||||| || | || ||| | ||||| || ||| Sbjct 668489 ATGCAGATCTTTGTCAAAACTTTGACTGGCAAGACCATAACCTTGGAAGTTGAACCCAGT 668430 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | || || || || ||||||||||| || || || || || Sbjct 668429 GACACCATTGAAAATGTAAAGGCTAAAATCCAAGACAAAGAAGGTATTCCCCCTGACCAG 668370 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAA-ACGT-CAGCGATTATA 24168 || | | |||| | |||||||| |||||||||| | | | || | ||| |||||| Sbjct 668369 CAACGTTTAATTTTTGCTGGCAAGCAGCTCGAAGATGGCCGTACACTTTCAG--ATTATA 668312 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||| || |||||||| || | ||||| || | ||| | || ||||| Sbjct 668311 ACATACAGAAAGAATCAACTTTGCATTTGGTACTCAGACTAAGGGGAGG 668263 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || |||||| | ||||| ||| | || || | ||||| ||| | | Sbjct 668033 ATGCAGATTTTCGTCAAAACACTTACTGGTAAAACTATCACATTAGAAGTAGAGCCTAGT 667974 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || ||| | || ||| || || ||||| ||||| || ||||| ||||| Sbjct 667973 GATACTATTGAGAACGTTAAAGCCAAAATCCAAGACAAGGAAGGAATTCCTCCTGATCAG 667914 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || || || || | | || || || || ||||||| | | | || |||||| Sbjct 667913 CAAAGGCTTATCTTTGCAGGTAAACAGCTTGAAGATGGTCGCACTCTTTCAGACTATAAC 667854 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||||||||||||| || | || || ||||| || || ||||| || Sbjct 667853 ATTCAAAAAGAATCCACTCTCCACTTGGTGTTGAGGTTAAGAGGTGG 667807 >seq435 Length=3082058 Score = 113 bits (124), Expect = 4e-20 Identities = 167/232 (72%), Gaps = 10/232 (4%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 |||||||| | ||||||||||| | ||||||||| | || || | ||||| ||| | Sbjct 740828 AAAATGCATATTTTTGTAAAAACCCTGACTGGAAAAACAATAACTCTTGAAGTAGAGTCG 740769 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 ||||||||| | || |||||||| ||| || ||||||| || ||||| ||| Sbjct 740768 TCTGACACCATCAATATTGTGAAACAAAAAATTCAAGATGAAGAAGGAATTCCTCCAGAT 740709 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACG---TC-AGC-G 24162 ||||| || ||||| | | || ||||| | |||||| ||||| || | | | Sbjct 740708 CAACAAAGGCTGATATTTGCGGGTAAGCAGTT---GGATGAC--AAACGCACTCTATCAG 740654 Query 24163 ATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGG 24214 ||||| |||||||||||||||| || |||| | ||| || | |||||||| Sbjct 740653 ATTATGACATTCAAAAAGAATCAACGCTTCACATGGTGCTACGTTTGAGAGG 740602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429849369642615