Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasteatoda_20tepidariorum_20[refseq_20GCF_5F000365465.2_202017-04- 14] 16,533 sequences; 1,445,396,121 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq546 167 3e-36 seq14474 114 1e-20 seq16166 98.7 1e-15 seq10454 86.0 7e-12 seq3186 82.4 9e-11 >seq546 Length=398126 Score = 167 bits (184), Expect = 3e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 19345 ACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATA 19404 ||||| |||||||| || |||||||| || || |||||||| ||||| | ||| || Sbjct 243760 ACCAAGTTTTCATTTACAATTCCATCGCTTGCAGCAAAAAAGGCTAAGATATGAGAGATG 243701 Query 19405 AAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTAATATCTTTAGATAAATCTACT 19464 || |||||||| ||||| | | | | | ||| ||| || ||||| |||| ||||||| Sbjct 243700 AAGTGTTTTTCTTCTGATTTCAGTTTTTCCCAGTCAGAAAAGTCTTTTGATAGATCTACT 243641 Query 19465 TCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACGATAT 19524 ||||| || ||||| ||||| ||||||||||| |||||||| | ||| ||||| ||||| Sbjct 243640 TCTTCTACGGTCCAGAAAGACGCCTCTGCTTTCTTATACATCTGCCACATATCTTGATAT 243581 Query 19525 TGTATAGGAAATATAACAAATCTATTTTTATTTTCTTTAAGAATAGGTTC 19574 | || ||||| |||||||| ||| ||| || |||||| ||| || Sbjct 243580 TCAATGGGAAAGATAACAAACCTACGGGGATTCTCCCTAAGAAGAGGCTC 243531 Score = 109 bits (120), Expect = 6e-19 Identities = 98/123 (80%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 19225 TCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCC 19284 ||||||||||||| ||| || || || ||||||||||||||||| | ||| || ||||| Sbjct 245615 TCTTTAACATATGTATCAATTAACAAGCTGTACATTTCTGAATGGACATTCTCAATAGCT 245556 Query 19285 ATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCG 19344 || ||||| || ||||||||||| || ||||| | ||| ||||| || |||| ||| Sbjct 245555 ATTTGAAAACCATAAAAACATCTGGCCTCTGTAACCTGAACTTCTTGACTGAATCGTTCC 245496 Query 19345 ACC 19347 ||| Sbjct 245495 ACC 245493 Score = 86.0 bits (94), Expect = 7e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 18756 ATTATATAtttttttGAATCCTAATTCTAATAGTAGTCTATCCGCTACAAATTTAATATA 18815 |||| || ||||| | || || |||| || | ||||| || ||||||| ||| || Sbjct 254105 ATTACTTACTTTTTCACAACCCAACTCTACAAGCAACCTATCTGCAACAAATTCAATGTA 254046 Query 18816 TGTGTTCATCATATCACAATTCATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAA 18875 | ||||| | ||||||||||| || |||||||| || ||||| ||||| Sbjct 254045 TTGTTTCATGAGTGTGTTGTTCATTCCTATCAAGGCGACAGGTAGAGCTTCTGTGAGAAA 253986 Query 18876 TTCTTGTTCTATATTTACTGCCTCTGATATAATAGATACAACTCTATCTTCATTAGGAGG 18935 ||| ||||| || ||||| |||| | ||| | ||||||| | ||| ||| Sbjct 253985 TTCCTGTTCAATGGCAACTGCATCTGTCACAATCTGTGCAACTCTTTTTTCTGAAGGCTT 253926 Query 18936 GTATAGAAGATGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCT 18985 || || ||||| | ||||| | || ||||||||||| || || |||| Sbjct 253925 GTTTAATAGATGACTGAACATGAGGCAGGCAAAATCACAGTGAAGACCCT 253876 >seq14474 Length=2471489 Score = 114 bits (126), Expect = 1e-20 Identities = 105/133 (79%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 || ||||| ||||||| ||||| | | || ||||||||||| || ||||| || ||| Sbjct 1672517 TGGAATTCACCAGATAAGACTCTTCTAGTGTAGATATTACTTGTGTAAGGTTCAATTGAT 1672576 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 ||||||||||||| ||| ||||| |||||||| || ||||| | || | ||| || ||| Sbjct 1672577 TCATTATTTCCAAGAATCTGAGCTGTTGATGCAGTTGGCATAGGCGCTAATAACAAACTA 1672636 Query 47448 TTTCTTACTCCAT 47460 ||||| || |||| Sbjct 1672637 TTTCTAACACCAT 1672649 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 48126 TCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGAC 48185 |||||||| || || | || || | |||||| |||||| ||| ||||| | | Sbjct 1696365 TCAAATTCTTCACCCCAGCAATCATGGAGCCCAGGTGATTCATCAGGGCACATAAGACTC 1696424 Query 48186 CAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAAT 48245 || ||||| |||| || || |||||||| ||| |||||||| | || ||| Sbjct 1696425 CACATTTCATCCTTTTCAACCCTCTGCATAAATAAATCAGGTATCCACAATGCATAAAAC 1696484 Query 48246 AAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATT 48305 ||||| || | | | |||| || |||||| | ||| |||| | ||||| ||||| | Sbjct 1696485 AAATCTCTTGCACGTTGTTCCTCTTTGCCAGTGTTCTTTTTCAAATCAAGGAAGTCAAAA 1696544 Query 48306 ATATCAGCATGCCATGGTTCTAAATATATTGC 48337 |||||||||||||| || ||||| || || || Sbjct 1696545 ATATCAGCATGCCAAGGCTCTAAGTAAATAGC 1696576 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659 ||||| ||||| || | ||| || || ||||| | |||||||||||||| | || | | Sbjct 1702637 GTTCCAGAATTGAAAAGTGTAGGGGAGGCATGCGTGAACCATTTCTCTGACATTAAATGA 1702696 Query 48660 TATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAAC 48719 ||||||||||| ||| ||| ||||| ||| ||||| | ||||| | ||| ||| Sbjct 1702697 TATGTTTCAATGGCAGCATCAATATCATCAGAATGAATACCAACCGATACTCTCATCAAC 1702756 Query 48720 ATATATTGAGGTCTTTCAAC 48739 |||| || |||| |||||| Sbjct 1702757 ATATGCTGTGGTCGTTCAAC 1702776 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 48354 TTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACA 48413 ||||| ||||||||||||| ||| | || ||||||||| ||||||||||||| || ||| Sbjct 1696870 TTATTTCCTCCTTGATCTACATAGCGAGCTGTATTGTTAAAAACTCTTAACATAGGTACA 1696929 Query 48414 ATACCATTTGATATACCATTGGT 48436 | ||||||||| | ||||| || Sbjct 1696930 AGACCATTTGAAGTTCCATTAGT 1696952 >seq16166 Length=1540 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 48126 TCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGAC 48185 |||||||| || || | || || | |||||| |||||| ||| ||||| | | Sbjct 33 TCAAATTCTTCACCCCAGCAATCATGGAGCCCAGGTGATTCATCAGGGCACATAAGACTC 92 Query 48186 CAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAAT 48245 || ||||| |||| || || |||||||| ||| |||||||| | || ||| Sbjct 93 CACATTTCATCCTTTTCAACCCTCTGCATAAATAAATCAGGTATCCACAATGCATAAAAC 152 Query 48246 AAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATT 48305 ||||| || | | | |||| || |||||| | ||| |||| | ||||| ||||| | Sbjct 153 AAATCTCTTGCACGTTGTTCCTCTTTGCCAGTGTTCTTTTTCAAATCAAGGAAGTCAAAA 212 Query 48306 ATATCAGCATGCCATGGTTCTAAATATATTGC 48337 |||||||||||||| || ||||| || || || Sbjct 213 ATATCAGCATGCCAAGGCTCTAAGTAAATAGC 244 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 48354 TTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACA 48413 ||||| ||||||||||||| ||| | || ||||||||| ||||||||||||| || ||| Sbjct 538 TTATTTCCTCCTTGATCTACATAGCGAGCTGTATTGTTAAAAACTCTTAACATAGGTACA 597 Query 48414 ATACCATTTGATATACCATTGGT 48436 | ||||||||| | ||||| || Sbjct 598 AGACCATTTGAAGTTCCATTAGT 620 >seq10454 Length=6501868 Score = 86.0 bits (94), Expect = 7e-12 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 65881 TTTCAAGATATTGTAGAGTTTTGTGAAAATATGGCAAATAAAGGAAAAATAGTGATAGTT 65940 |||| ||||| ||| | ||| |||||| ||||||||||| |||||| | || ||||| Sbjct 3595195 TTTCCAGATACTGTTCAATTTGCTGAAAAAATGGCAAATAATGGAAAAGTTGTTATAGTG 3595136 Query 65941 GCAGCATTGGATGGAACATTTAAAAGAAAA 65970 || ||||| ||||| |||||| |||||||| Sbjct 3595135 GCTGCATTAGATGGTACATTTCAAAGAAAA 3595106 >seq3186 Length=3123 Score = 82.4 bits (90), Expect = 9e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659 ||||| ||||| || | || || || ||||| | |||||||||||||| | || | | Sbjct 3078 GTTCCAGAATTGAAGAGCGTAGGGGAGGCATGTGTGAACCATTTCTCTGACATTAAATGA 3019 Query 48660 TATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAAC 48719 || |||||||| ||| ||| ||||| ||| ||||| | ||| || | ||| ||| Sbjct 3018 TACGTTTCAATGGCAGCATCAATATCATCAGAATGAATACCAACAGACACTCTCATCAAC 2959 Query 48720 ATATATTGAGGTCTTTCAAC 48739 |||| || |||| |||||| Sbjct 2958 ATATGCTGTGGTCGTTCAAC 2939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561992633190120