Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasteatoda_20tepidariorum_20[refseq_20GCF_5F000365465.2_202017-04- 14] 16,533 sequences; 1,445,396,121 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq546 95.1 1e-14 seq10454 89.7 6e-13 >seq546 Length=398126 Score = 95.1 bits (104), Expect = 1e-14 Identities = 144/203 (71%), Gaps = 4/203 (2%) Strand=Plus/Minus Query 37563 AAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAA 37622 ||||||||||| || || ||||| || || ||||| || || | | || || || Sbjct 243757 AAGTTTTCATTTACAATTCCATCGCTTGCAGCAAAAAAGGCTAAGATATGAGAGATGAAG 243698 Query 37623 TGTCTTTCATC--ATTTGATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTT 37680 ||| |||| || |||| | ||||| ||| ||| || |||||||||| ||| |||| Sbjct 243697 TGTTTTTCTTCTGATTT--CAGTTTTTCCCAGTCAGAAAAGTCTTTTGATAGATCTACTT 243640 Query 37681 CATCAACGGTCCAAAAACTTGCCAATGCACGTTTATACATCGTCCAAATATCATTATGTT 37740 | || |||||||| ||| ||| ||| ||||||||| ||| ||||| | || || Sbjct 243639 CTTCTACGGTCCAGAAAGACGCCTCTGCTTTCTTATACATCTGCCACATATCTTGATATT 243580 Query 37741 GTATTGGAAATATTACAAATCTA 37763 || ||||| || ||||| ||| Sbjct 243579 CAATGGGAAAGATAACAAACCTA 243557 Score = 89.7 bits (98), Expect = 6e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259 |||||||| || || ||||||||| || || | || ||||| | |||||| || || Sbjct 248754 TCATCTCTGCTGATTAATTCATTACTGAATGTGAGACCAGGCATAAGACCTCTCTTCTTC 248695 Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319 | ||| || || | |||||| || ||||| || || || ||||| || ||||||||||| Sbjct 248694 AACCAGAAAATAGATGCAAAGGAGCCAGAGAAAAATATGCCTTCCACGGCTGCAAATGCA 248635 Query 37320 ACAA 37323 |||| Sbjct 248634 ACAA 248631 Score = 84.2 bits (92), Expect = 3e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 37440 TCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCT 37499 ||| | | ||| |||||||||| || || |||||||| || || | ||| ||||||||| Sbjct 245615 TCTTTAACATATGTATCAATTAACAAGCTGTACATTTCTGAATGGACATTCTCAATAGCT 245556 Query 37500 ATCTGAAAACCATAAAAACACCTAGCTTC 37528 || ||||||||||||||||| || || || Sbjct 245555 ATTTGAAAACCATAAAAACATCTGGCCTC 245527 >seq10454 Length=6501868 Score = 89.7 bits (98), Expect = 6e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 78277 AATTTTCTGAAAATATGGCAAATAAAGGAAAAATTGTTATTGTTTCGGCATTAGATGCTA 78336 ||||| ||||||| ||||||||||| |||||| ||||||| || | |||||||||| || Sbjct 3595179 AATTTGCTGAAAAAATGGCAAATAATGGAAAAGTTGTTATAGTGGCTGCATTAGATGGTA 3595120 Query 78337 CATATCAAAGAAAA 78350 ||| |||||||||| Sbjct 3595119 CATTTCAAAGAAAA 3595106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592194390329320