Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasteatoda_20tepidariorum_20[refseq_20GCF_5F000365465.2_202017-04- 14] 16,533 sequences; 1,445,396,121 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq435 127 2e-24 seq4472 100 2e-16 seq11726 87.8 1e-12 >seq435 Length=3082058 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 48557 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTC 48616 ||||| || ||||| ||||||||||| | ||||| |||||| | || | ||| || Sbjct 740616 CACCATGTGAAGCGTTGATTCTTTTTGAATGTCATAATCTGATAGAGTGCGTTTGTCATC 740675 Query 48617 CAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCT 48676 |||||||||||| ||||||||||| | |||||||| | |||| || || | || Sbjct 740676 CAACTGCTTACCCGCAAATATCAGCCTTTGTTGATCTGGAGGAATTCCTTCTTCATCTTG 740735 Query 48677 AATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTT 48736 ||| |||||||| ||| | | | || |||| ||| || || | || || ||||| Sbjct 740736 AATTTTTTGTTTCACAATATTGATGGTGTCAGACGACTCTACTTCAAGAGTTATTGTTTT 740795 Query 48737 TCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||| |||| |||||||||||||| ||||| Sbjct 740796 TCCAGTCAGGGTTTTTACAAAAATATGCAT 740825 >seq4472 Length=7509737 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 |||| ||| |||| ||| || || |||||||| || |||||||| || || |||| Sbjct 667132 AGCCTCAAAACCAGATGGAGTGTAGATTCTTTTTGGATGTTGTAATCTGAGAGGGTTCGG 667191 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | ||||||||| ||||| ||||| ||||||||||| | |||| || ||| Sbjct 667192 CCATCTTCAAGCTGCTTACCAGCAAAAATCAGACGCTGTTGATCGGGTGGAATACCTTCC 667251 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || ||| || ||| ||| | | | || | || || || | ||| Sbjct 667252 TTATCTTGAATTTTAGCTTTCACATTTTCTATGGTATCACTTGGTTCAACTTCTAGTGTA 667311 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||||||| |||| |||||| ||||| || ||||| Sbjct 667312 ATAGTTTTTCCTGTCAGAGTTTTGACAAATATTTGCAT 667349 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| || ||| |||||||| ||||||||||| || | ||| | || || Sbjct 667369 ACCAAATGGAGGGTGGATTCTTTTTGGATATTGTAATCGGACAATGTTCTTCCATCTTCT 667428 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 ||||||||||| || || |||| | |||||||| | || | ||| ||||| || | Sbjct 667429 AACTGCTTACCAGCGAAAATCAACCTTTGTTGATCTGGAGGGATGCCTTCCTTATCTTGA 667488 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || ||| ||| ||| | | | || | ||| || || | || || || ||| Sbjct 667489 ATTTTTGCTTTCACATTTTCAATTGTATCACTAGGCTCTACTTCTAAAGTTATGGTCTTT 667548 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || |||||||| |||||||| ||||| Sbjct 667549 CCGGTTAAAGTTTTCACAAAAATTTGCAT 667577 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || || ||||| ||||||||||| ||||| || | ||| | || ||| Sbjct 668509 ACCAAGTGAAGTGTAGATTCTTTCTGAATATTGTAGTCAGACAGGGTACGACCATCTTCC 668568 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 || |||||||| || || |||| | ||| ||||| | |||| || || ||||| Sbjct 668569 AATTGCTTACCAGCGAAGATCAACCTCTGCTGATCAGGTGGAATTCCTTCTTTGTCCTGG 668628 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 |||||| ||| ||| | | | || | ||| ||||| | || || ||||| Sbjct 668629 ATCTTTGCTTTCACATTCTCAATCGTGTCACTAGGCTCAACCTCTAGTGTGATAGTTTTG 668688 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || |||||||||||||| Sbjct 668689 CCAGTTAATGTCTTAACAAAAATCTGCAT 668717 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || |||| || ||||||||| || || ||| ||||||||||| || || || || Sbjct 667807 CCACCTCTTAACCTCAACACCAAGTGGAGAGTGGATTCTTTTTGAATGTTATAGTCTGAA 667866 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| | ||| | || || | ||| ||||| ||||| || || | || ||||| | ||| Sbjct 667867 AGAGTGCGACCATCTTCAAGCTGTTTACCTGCAAAGATAAGCCTTTGCTGATCAGGAGGA 667926 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGAC--GCCTCCA 48717 | || |||||||| || ||| | |||| | | || | | | | || | ||| | Sbjct 667927 ATTCCTTCCTTGTCTTGGAT-TTTGGCTTTAACGTTCTCA-ATAGTATCACTAGGCTCTA 667984 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 | || | || || ||||| || || | ||||| || ||||||||||| Sbjct 667985 CTTCTAATGTGATAGTTTTACCAGTAAGTGTTTTGACGAAAATCTGCAT 668033 >seq11726 Length=1646561 Score = 87.8 bits (96), Expect = 1e-12 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 || ||||||| || |||||| |||||||||||||| ||||| |||| | || ||| Sbjct 660136 ACTAAATGTAAAGTAGACTCTTTCTGAATATTGTAATCGGATAGTGTTCGCCCATCTTCC 660077 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAA 48660 ||||| || || ||||| |||| ||||||||| || | ||||| Sbjct 660076 AACTGTTTGCCAGCAAAGATCAATCGCTGTTGGTCAGGGGGAA 660034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380860842621159