Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasteatoda_20tepidariorum_20[refseq_20GCF_5F000365465.2_202017-04- 14] 16,533 sequences; 1,445,396,121 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq13758 125 2e-23 seq2689 111 5e-19 seq8377 102 2e-16 seq5072 98.7 3e-15 seq546 91.5 4e-13 >seq13758 Length=5483775 Score = 125 bits (138), Expect = 2e-23 Identities = 245/358 (68%), Gaps = 8/358 (2%) Strand=Plus/Minus Query 289011 CGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGA 289070 ||||| || | |||| |||||||| ||||||||| |||||||| || ||||| || | Sbjct 1327922 CGAATTACTACGTTTTGCACCAACAGAATCAATTTCATCAATGAATATTACACAAGGTGC 1327863 Query 289071 ATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACAT 289130 | | || ||||||| | |||| || | || || | ||||| | || Sbjct 1327862 TCGAGATTTAGCCCTTGCAAAGAGATCTCGAACTCTACGAGCACCTTGTCCAACTAAAAT 1327803 Query 289131 TTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGC 289190 ||| ||||||||| | | | |||| |||| ||||| ||||| ||||| ||||| Sbjct 1327802 TTCATCAAATTCAGGGCCTGCAGCATGAAAAAATGGTACATCAGCTTCACCTGCAACTGC 1327743 Query 289191 CCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTAC 289250 | |||| ||| || ||||| || || |||||||| | | | |||||||| |||| Sbjct 1327742 ACGAGCCAAAAGCGTTTTACCAGTACCTGGTGGTCCAACAAGCAACACTCCCTTAGGTAG 1327683 Query 289251 TTTTGCCCC---AGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTC 289307 ||| | || ||| || | | || || || | || | ||| ||||||||||||| Sbjct 1327682 CTTTCCACCTAAAGCTGA---AAACTTATCTGGATTTTTCAGAAACTCTACAATTTCCTG 1327626 Query 289308 AAGTTCATATTTTGCCTCA-TCACATCCTGCTACATCAGCAAAAGTAATATTAATATC 289364 || || | ||| || ||| | ||| ||| |||||| ||||||||| || ||| || Sbjct 1327625 TAGCTCCTGTTTAGCTTCATTTACA-CCTTTAACATCATCAAAAGTAACATCAATTTC 1327569 >seq2689 Length=8589770 Score = 111 bits (122), Expect = 5e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 302537 TATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGAC 302596 ||||||| ||||| |||||| | ||| | ||||||| ||| || ||||| | Sbjct 7075036 TATTTCTGACGGTGCCATCATATGTAGCCATTACACTTTCCATAGCCTTTATCAAACGTC 7075095 Query 302597 GCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCAC 302656 ||||||||||||||||| || ||||||||||| |||||||| ||||| ||||||| | Sbjct 7075096 GCTGAATATAACCAGTTTCAGCAGTTTTTACAGCAGTATCAATGAGACCTTCACGACCTC 7075155 Query 302657 CCATAGCATGGAAGAA 302672 |||| |||||||| || Sbjct 7075156 CCATGGCATGGAAAAA 7075171 >seq8377 Length=4725217 Score = 102 bits (112), Expect = 2e-16 Identities = 135/186 (73%), Gaps = 1/186 (1%) Strand=Plus/Plus Query 106906 CATAGCAAAAGACGAACTCATACCATAGAAAAACTTGAACTTTTTACCATCTTCCTCAAT 106965 ||||||| || |||||||| ||||| |||| || | ||||||||||| | ||| || Sbjct 3741706 CATAGCAGTAGCAGAACTCATGCCATAAAAAAGTTTCACCTTTTTACCATTCTTCTCTAT 3741765 Query 106966 TAACTTACCTGGATTTTCATCGTGTCCCGCAAAGACACCGCCAACCATTACGAAATCAGC 107025 || | || | || ||| ||||| ||||| | || |||| |||||| |||||||| Sbjct 3741766 TACATCTCCACCAGATTGATCATGTCCAGCAAACATTCCACCAATCATTACAAAATCAGC 3741825 Query 107026 CCCGCCACCGAATGCTTTAGCCATATCACCAGGGCAAGTAATTCCACCATCACTAATAAT 107085 ||| |||| || ||||| |||| || ||||| |||| |||||||| ||| || Sbjct 3741826 CCCAGCACCAAAAGCTTTTGCCACGTCTCCAGGATTAGTACACCCACCATC-CTACAAAA 3741884 Query 107086 ATAAGT 107091 ||||| Sbjct 3741885 GTAAGT 3741890 >seq5072 Length=10431 Score = 98.7 bits (108), Expect = 3e-15 Identities = 134/186 (72%), Gaps = 1/186 (1%) Strand=Plus/Minus Query 106906 CATAGCAAAAGACGAACTCATACCATAGAAAAACTTGAACTTTTTACCATCTTCCTCAAT 106965 ||||||| || |||||||| ||||| |||| || | |||||||||| | ||| || Sbjct 9797 CATAGCAGTAGCAGAACTCATGCCATAAAAAAGTTTCACTTTTTTACCATTCTTCTCTAT 9738 Query 106966 TAACTTACCTGGATTTTCATCGTGTCCCGCAAAGACACCGCCAACCATTACGAAATCAGC 107025 || | || | || ||| ||||| ||||| | || |||| |||||| |||||||| Sbjct 9737 TACATCTCCACCAGATTGATCATGTCCAGCAAACATTCCACCAATCATTACAAAATCAGC 9678 Query 107026 CCCGCCACCGAATGCTTTAGCCATATCACCAGGGCAAGTAATTCCACCATCACTAATAAT 107085 ||| |||| || ||||| |||| || ||||| |||| |||||||| ||| || Sbjct 9677 CCCAGCACCAAAAGCTTTTGCCACGTCTCCAGGATTAGTACACCCACCATC-CTACAAAA 9619 Query 107086 ATAAGT 107091 ||||| Sbjct 9618 GTAAGT 9613 >seq546 Length=398126 Score = 91.5 bits (100), Expect = 4e-13 Identities = 143/202 (71%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 133072 TAGGTTTGTTATGTTCCCAATTAAGGACGACGAGATTTGGCAGATGTATAAAAAA-CAGC 133130 |||||||||||| || || ||| | | | || || |||||||||||||| ||| ||| Sbjct 243557 TAGGTTTGTTATCTTTCCCATTGAATATCAAGATATGTGGCAGATGTATAAGAAAGCAG- 243615 Query 133131 AAGATTTATTTTGGACTTCAACTGAAGTAGATTTATCCAAAGACCCAGCCCACTGGGAAG 133190 | | | || ||||| | ||||||||| |||| |||||| | |||||||| Sbjct 243616 AGGCGTCTTTCTGGACCGTAGAAGAAGTAGATCTATCAAAAGACTTTTCTGACTGGGAAA 243675 Query 133191 CCCTTACTGGGGATGAAAAACATTTTATTTCTATGATTTTAGCGTTTTTTGCTGCGAGTG 133250 || | || |||||||| || || ||| || ||||| ||||||||||| || | Sbjct 243676 AACTGAAATCAGAAGAAAAACACTTCATCTCTCATATCTTAGCCTTTTTTGCTGCAAGCG 243735 Query 133251 ATGGTATTGTTCTTGAAAATTT 133272 |||| ||||| |||||| || Sbjct 243736 ATGGAATTGTAAATGAAAACTT 243757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471505826257621