Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasteatoda_20tepidariorum_20[refseq_20GCF_5F000365465.2_202017-04- 14] 16,533 sequences; 1,445,396,121 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq5138 163 4e-34 seq3375 118 2e-20 >seq5138 Length=1357 Score = 163 bits (180), Expect = 4e-34 Identities = 175/230 (76%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||||||||| |||||||| || || |||| |||| |||| |||| | Sbjct 935 ATCTACAAGGTGCTGAAGCAGGTCCATCCTGACACCGG-----CATC-TCCAGCAAGGCG 988 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||| |||||||||||||| |||| ||||||| | ||||||| | Sbjct 989 ATGAGCATCATGAACAGCTTTGTCAACGACATTTTCGAGCGCATCGCCGCCGAGGCTTCT 1048 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 |||||||||| || |||||||||| ||| ||| | |||| ||||||||||| || ||| Sbjct 1049 CGCCTGGCGCACTACAACAAGCGCTCCACCATCACCTCGCGGGAGATCCAGACGGCTGTG 1108 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || || | ||| |||||| |||| | |||||||||| ||| ||||| Sbjct 1109 CGTCTTCTTCTGCCCGGCGAGTTGGCAAAGCACGCCGTCAGCGAAGGCAC 1158 >seq3375 Length=12126510 Score = 118 bits (130), Expect = 2e-20 Identities = 167/232 (72%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 || || ||||| || |||||||| || || || ||| |||| || | |||| || Sbjct 1832978 ATATATAAGGTCCTGAAGCAGGTTCATCCGGACAC---TGG--CATC-TCGAGCAAGGCC 1832925 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| ||||||||| || ||||| ||||| | || ||||| | | | || | | Sbjct 1832924 ATGTCCATCATGAACAGCTTCGTCAATGACATATTTGAACGCATTGCCGCTGAATCTTCT 1832865 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 |||||||| | || ||||||||| || ||| | || ||| | |||||||| || Sbjct 1832864 CGCCTGGCCCACTACAACAAGCGGTCAACTATCACTAGCCGAGAGGTACAGACCGCTGTC 1832805 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || ||| || ||| |||||||||||||| ||||| || ||||| ||||||| Sbjct 1832804 CGGCTGCTCTTGCCCGGCGAACTGGCCAAACACGCGGTATCCGAAGGCACCA 1832753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7176216561762346