Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasteatoda_20tepidariorum_20[refseq_20GCF_5F000365465.2_202017-04- 14] 16,533 sequences; 1,445,396,121 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq546 150 2e-31 seq14474 147 3e-30 seq10454 89.7 7e-13 >seq546 Length=398126 Score = 150 bits (166), Expect = 2e-31 Identities = 160/211 (76%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 39999 CCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAA 40058 |||| |||||||| || |||||||| || || |||||||| || || | ||| || | Sbjct 243759 CCAAGTTTTCATTTACAATTCCATCGCTTGCAGCAAAAAAGGCTAAGATATGAGAGATGA 243700 Query 40059 AATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATATCTACTT 40118 | | |||||| || | | ||| ||| | ||||||| | |||||||||| |||||||| Sbjct 243699 AGTGTTTTTCTTCTGATTTCAGTTTTTCCCAGTCAGAAAAGTCTTTTGATAGATCTACTT 243640 Query 40119 CTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGATATT 40178 |||| | ||||| || ||||||||||| || || ||||| | ||| ||||| |||||| Sbjct 243639 CTTCTACGGTCCAGAAAGACGCCTCTGCTTTCTTATACATCTGCCACATATCTTGATATT 243580 Query 40179 GTATTGGAAAAATAACAAATCTATTTGGATT 40209 || ||||| |||||||| ||| ||||| Sbjct 243579 CAATGGGAAAGATAACAAACCTACGGGGATT 243549 Score = 140 bits (154), Expect = 4e-28 Identities = 166/223 (74%), Gaps = 3/223 (1%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| || |||||||| ||| |||||||| |||||||| ||||| | ||| | Sbjct 248756 CCTCATCTCTGCTGATTAATTCATTACTGAATGTGAGACCAGGCATAAGACCTCTCTTCT 248697 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | | ||| || || | ||||| || ||||| || || |||||||| || |||||||||| Sbjct 248696 TCAACCAGAAAATAGATGCAAAGGAGCCAGAGAAAAATATGCCTTCCACGGCTGCAAATG 248637 Query 39759 CAACAAGTCTCTCTCCGTAACTTGTA-TCAT--TATGTATCCACTTCTGTGCCCAATCAG 39815 |||||| ||| ||||| | | | || | || ||||| ||| | ||||| || | Sbjct 248636 CAACAACTCTTTCTCCAAAGGAAGCATTCGTGCTACTGATCCAGTTCAGCGCCCAGTCCG 248577 Query 39816 CTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAG 39858 | ||| | || ||||| |||| ||||| || ||||| || || Sbjct 248576 CCTTCCTTTTAACACAGGGCAAAGTTTCGATCGCATTGAACAG 248534 Score = 109 bits (120), Expect = 8e-19 Identities = 98/123 (80%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 39878 TCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCC 39937 ||||||||||||||||| ||||||| || |||||||||||||||| || ||||| || Sbjct 245615 TCTTTAACATATGTATCAATTAACAAGCTGTACATTTCTGAATGGACATTCTCAATAGCT 245556 Query 39938 ATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCC 39997 || ||||| || ||||||||||| || || |||| || || ||| || |||| |||| Sbjct 245555 ATTTGAAAACCATAAAAACATCTGGCCTCTGTAACCTGAACTTCTTGACTGAATCGTTCC 245496 Query 39998 GCC 40000 || Sbjct 245495 ACC 245493 Score = 86.0 bits (94), Expect = 9e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 39291 AAAAATGATTATCTTCTTGTGACATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCT 39350 ||| ||||| |||| | |||||||||||| ||||||||||| ||||| |||| Sbjct 257329 AAACATGATCTTCTTTGTTTGACATAACTCCACACTTTTGGTATTCTCCAACTTTCTTCT 257270 Query 39351 CGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCCATGAAATCAAACGGATT 39405 | || ||||| |||||||| || | |||| ||||||||||||||| ||||| Sbjct 257269 CAAAGAAATTGGTTTTGCCCTCAAGACTGATATGTTCCATGAAATCAAATGGATT 257215 >seq14474 Length=2471489 Score = 147 bits (162), Expect = 3e-30 Identities = 113/134 (84%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 || ||||| |||||||| ||||| | |||||| |||||||| || || ||||| | ||| Sbjct 1672517 TGGAATTCACCAGATAAGACTCTTCTAGTGTAGATATTACTTGTGTAAGGTTCAATTGAT 1672576 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 ||||||||||| ||||| ||||| |||||||||||||||||||| || | || |||||| Sbjct 1672577 TCATTATTTCCAAGAATCTGAGCTGTTGATGCAGTTGGCATAGGCGCTAATAACAAACTA 1672636 Query 68839 TTTCTAAGACCATG 68852 ||||||| |||||| Sbjct 1672637 TTTCTAACACCATG 1672650 Score = 123 bits (136), Expect = 3e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 68955 ATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTA 69014 |||||| || || | ||| || ||| ||||||||||| || ||||||||||| | | Sbjct 1674021 ATATGTCTCGTATGTTCCCAACTTTTCGGCTAGTTCACAGCTAGCCTCTAATGCGGCAAA 1674080 Query 69015 ATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATA 69074 |||||| ||||| ||||| | ||| || | ||| |||||| |||||| |||||||| Sbjct 1674081 ATAAATGGTTTCAAAAATGTCTGCATTTAGCTTTTGAGCTTCTTCACTATCAAATGGATA 1674140 Query 69075 ATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCT 69134 | |||||||| ||||| || || || ||||| || || || || || ||||| | Sbjct 1674141 TCTCATCAGAATAAAAGCATCCGCTAAACCTTGAACTCCTATTCCAATGGGCCTATGACG 1674200 Query 69135 CTTATTTGAACTTTCAGC 69152 |||||||| |||| || Sbjct 1674201 TTTATTTGATTTTTCCGC 1674218 Score = 114 bits (126), Expect = 2e-20 Identities = 110/141 (78%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 68442 CCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATATT 68501 ||| |||||||||||||| ||||| | || |||| | || || || ||||| | ||| Sbjct 1671512 CCAGCCGTAGAAATGCATGCTTGTGATCTTTCCATAATTAGGTTCAGCAATATGCACATT 1671571 Query 68502 CATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTT 68561 || || || |||||||| ||| ||||||||||||| || |||||||| | ||| | || Sbjct 1671572 CAAGGACTGGCTTTGATCAATGTAAGCTCCTCTATCAGCAGCCATTTTCAATATATTTTT 1671631 Query 68562 TTGAGGAATTTCCCAAATAGT 68582 |||||||||||||| | ||| Sbjct 1671632 CTGAGGAATTTCCCAGACAGT 1671652 Score = 100 bits (110), Expect = 4e-16 Identities = 124/166 (75%), Gaps = 4/166 (2%) Strand=Plus/Plus Query 70336 CTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAATA 70395 |||||| ||| || ||||| ||||| | ||| || || || |||| || ||||||||| Sbjct 1721251 CTAAATGTTTTCTTCGTTTCTTTGTGCAGATTGGAGATAGCAATTCGAGCAGCTAGAATA 1721310 Query 70396 GCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTAAT 70455 |||||||| ||||| | |||||| |||||| || ||||| ||||||| |||||| | Sbjct 1721311 GCATAGTCTGGATGCTTTGTAGTCATAGTAGCAGCAATTTCAGCAGCTAGGTTATCTAGT 1721370 Query 70456 TCTATAGTTGTAACTCCGTTATA-TAGCC-CTTGAATAACTTTCAT 70499 || | || || || || ||| |||| ||| || |||||||| Sbjct 1721371 TCAACTGTAGTGACACCAGGATACAAGCCACTT--ATTACTTTCAT 1721414 Score = 86.0 bits (94), Expect = 9e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 ||||| | ||| || | |||||| || || || ||||||||||| || || | | || Sbjct 1702637 GTTCCAGAATTGAAAAGTGTAGGGGAGGCATGCGTGAACCATTTCTCTGACATTAAATGA 1702696 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 ||||||||||| || | || ||||| |||||| || | || || | ||||||| Sbjct 1702697 TATGTTTCAATGGCAGCATCAATATCATCAGAATGAATACCAACCGATACTCTCATCAAC 1702756 Query 70111 ATATGCTGAGGTCGTTCTAC 70130 |||||||| |||||||| || Sbjct 1702757 ATATGCTGTGGTCGTTCAAC 1702776 >seq10454 Length=6501868 Score = 89.7 bits (98), Expect = 7e-13 Identities = 76/91 (84%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 87349 TTCCCAGACATAGTGGAATTCTGC-GAATACATGGCAAACAATGGAAAAATAGTTATAGT 87407 || ||||| | || |||| ||| ||| | |||||||| ||||||||| | |||||||| Sbjct 3595195 TTTCCAGATACTGTTCAATT-TGCTGAAAAAATGGCAAATAATGGAAAAGTTGTTATAGT 3595137 Query 87408 GGCTGCATTAGATGGAACATTTCAACGAAAA 87438 ||||||||||||||| ||||||||| ||||| Sbjct 3595136 GGCTGCATTAGATGGTACATTTCAAAGAAAA 3595106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686766841710120