Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasteatoda_20tepidariorum_20[refseq_20GCF_5F000365465.2_202017-04- 14] 16,533 sequences; 1,445,396,121 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq546 143 2e-29 >seq546 Length=398126 Score = 143 bits (158), Expect = 2e-29 Identities = 166/224 (74%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 43679 CTTACAGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAA 43738 |||| || ||||| ||||||||| | ||||| ||| ||||||| || || ||||| Sbjct 243540 CTTAGGGAGAATCCCCGTAGGTTTGTTATCTTTCCCATTGAATATCAAGATATGTGGCAG 243599 Query 43739 ATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGAC 43798 ||||| || |||||| ||||||| || ||||| | ||||||||| ||| | | |||||| Sbjct 243600 ATGTATAAGAAAGCAGAGGCGTCTTTCTGGACCGTAGAAGAAGTAGATCTATCAAAAGAC 243659 Query 43799 TTAGCACATTGGATTGCATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCG 43858 || | | ||| | | ||| || |||||||||| || || ||| | || || Sbjct 243660 TTTTCTGACTGGGAAAAACTGAAATCAGAAGAAAAACACTTCATCTCTCATATCTTAGCC 243719 Query 43859 TTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAG 43902 ||||||||||| ||||| || || || |||||||| ||||| || Sbjct 243720 TTTTTTGCTGCAAGCGATGGAATTGTAAATGAAAACTTGGTAAG 243763 Score = 120 bits (132), Expect = 2e-22 Identities = 161/221 (73%), Gaps = 5/221 (2%) Strand=Plus/Plus Query 44040 TGTTTAATGCGATAGAAACAGTACC-TGCGATTAAACATAAAGCAGACTGGGCCCTTAAA 44098 |||| |||||||| ||||| | || || | ||||| || || |||||||| || || Sbjct 248535 TGTTCAATGCGATCGAAACTTTGCCCTGTG-TTAAAAGGAAGGCGGACTGGGCGCTGAAC 248593 Query 44099 TGGATAAATT---CAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAA 44155 ||||| | | | |||| ||| ||||||||| || |||| || ||||||| |||||| Sbjct 248594 TGGATCAGTAGCACGAATGCTTCCTTTGGAGAAAGAGTTGTTGCATTTGCAGCCGTGGAA 248653 Query 44156 GGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATG 44215 ||||| || || || || || ||||| | || || ||||| ||||| ||||| | ||| Sbjct 248654 GGCATATTTTTCTCTGGCTCCTTTGCATCTATTTTCTGGTTGAAGAAGAGAGGTCTTATG 248713 Query 44216 CCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGA 44256 ||||| | || || ||||| ||||| || | ||||| Sbjct 248714 CCTGGTCTCACATTCAGTAATGAATTAATCAGCAGAGATGA 248754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397375914230665