Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasteatoda_20tepidariorum_20[refseq_20GCF_5F000365465.2_202017-04- 14] 16,533 sequences; 1,445,396,121 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1840 96.9 4e-15 seq546 84.2 2e-11 >seq1840 Length=586137 Score = 96.9 bits (106), Expect = 4e-15 Identities = 143/200 (72%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||| || | | ||| |||||||| || || || ||||| ||||| || ||| Sbjct 358070 GTGAAAATATACCTCGCGCTGGCAGCATCTTTACCGCCTTGTAGACGAGTACCAAACTGT 358011 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | || ||||| || | ||||||| ||| ||||| ||||| ||||| | Sbjct 358010 CCAATTGGTAACAAGATATTTATGTTGTTGCTGCCAACAAAATTTTGGGCCAAACCTATG 357951 Query 117425 ATCGTACCTTGGAG-GCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCC 117483 || || ||| || ||| || |||||||| || ||||| | ||||| || || | || Sbjct 357950 ATTGTTCCTGTAAGAGCT-GCTTCACCATGATGGTACGCTGAATGCTCAGCAACTGAACC 357892 Query 117484 CGCCAGCTGAGCCACCTTCA 117503 || ||||||||||| |||| Sbjct 357891 AGCTAGCTGAGCCACTTTCA 357872 Score = 91.5 bits (100), Expect = 2e-13 Identities = 196/291 (67%), Gaps = 4/291 (1%) Strand=Plus/Minus Query 152011 GTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCC 152070 || || ||||||||| ||||| || || | | |||||| ||||| || || ||| Sbjct 358088 GTAATGGGACTCAAATTTGTGAAAATATACCTCGCGCTGGCAGCATCTTTACCGCCTTGT 358029 Query 152071 AGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAA 152130 || || || |||||||||||| || | || || | ||||||| ||| || ||| Sbjct 358028 AGACGAGTACCAAACTGTCCAATTGGTAACAAGATATTTATGTTGTTGCTGCCAACAAAA 357969 Query 152131 TTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTC 152190 || || |||||| | || || || ||| |||||||| || || ||||| | Sbjct 357968 TTTTGGGCCAAACCTATGATTGTTCCTGTAAGAGCTGCTTCACCATGATGGTACGCTGAA 357909 Query 152191 TGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCA--TGTCCGTCGTCAGGTTCTTCT 152248 ||||| || | | || || | ||| ||||| |||| | || | ||| || ||| Sbjct 357908 TGCTCAGCAACTGAACCAGCTAGCTGAGCCACTTTCACTTCTCGTTTATCA--TTTCTCT 357851 Query 152249 TGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAACCGTCCACCA 152299 | | ||| | ||||| || || ||||| |||||| ||||| || |||| Sbjct 357850 TAACACAAGTGTAAAGAACTTTACGCTGTCCTGGTTTTAAACCATCAACCA 357800 >seq546 Length=398126 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/229 (69%), Gaps = 5/229 (2%) Strand=Plus/Minus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||||||||| || |||||||| || | || ||||||||||| || | ||||||| Sbjct 248754 TCATCTCTGCTGATTAATTCATTACTGAATGTGAGACCAGGCATAAGACCTCTCTTCTTC 248695 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891 ||||| || || | ||||| ||| ||| || |||||||| || ||||| || Sbjct 248694 AACCAGAAAATAGATGCAAAGGAGCCAGAGAAAAATATGCCTTCCACGGCTGCAAATGCA 248635 Query 74892 ACAAGGCGTTGCGCGAACGGTGCAT---CGGAAGTCATCCAAGTCTGAGCCCATTCAGCT 74948 |||| | || | || | |||| | | | ||||| || | ||||| || || Sbjct 248634 ACAACTCTTTCTCCAAAGGAAGCATTCGTGCTACTGATCCAGTTCAGCGCCCAGTCCGC- 248576 Query 74949 TTTCGTTTGACCGCAGGG-ACAGTATCGATCGCTTGGAAGAGGCTTGCC 74996 ||| ||| | | ||||| | ||| |||||||| | ||| || ||| || Sbjct 248575 CTTCCTTTTAACACAGGGCAAAGTTTCGATCGCATTGAACAGCCTTTCC 248527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547102910973400