Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasteatoda_20tepidariorum_20[refseq_20GCF_5F000365465.2_202017-04- 14] 16,533 sequences; 1,445,396,121 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq4472 104 2e-17 seq435 86.0 5e-12 >seq4472 Length=7509737 Score = 104 bits (114), Expect = 2e-17 Identities = 170/244 (70%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 39041 ACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTT 39100 || ||||||| || || |||||||| | |||||||| || || ||| ||||||| Sbjct 667792 ACAAAAATTTG--CATACCACCTCTTAACCTCAACACCAAGTGGAGAGTGGATTCTTTTT 667849 Query 39101 GTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGAC 39160 | || ||||| || | ||| || || | || ||||||||||| || ||||| ||||| | Sbjct 667850 GAATGTTATAGTCTGAAAGAGTGCGACCATCTTCAAGCTGTTTACCTGCAAAGATAAGCC 667909 Query 39161 GCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCG 39220 ||||| || | || | | || ||||| |||||| ||| | || | | | Sbjct 667910 TTTGCTGATCAGGAGGAATTCCTTCCTTGTCTTGGATTTTGGCTTTAACGTTCTCAATAG 667969 Query 39221 TATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTT 39280 |||| || | ||| || || | |||||| |||| || || || ||||| || || || | Sbjct 667970 TATCACTAGGCTCTACTTCTAATGTGATAGTTTTACCAGTAAGTGTTTTGACGAAAATCT 668029 Query 39281 GCAT 39284 |||| Sbjct 668030 GCAT 668033 Score = 87.8 bits (96), Expect = 2e-12 Identities = 112/152 (74%), Gaps = 2/152 (1%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 |||||||| | || | |||||||| || ||| || ||||| || || || || | | Sbjct 666130 CCTCCTCTCAGACGGAGTACCAAATGAAGAGTGGATTCCTTTTGAATGTTGTAGTCTGAA 666189 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || ||||| | || ||||| || ||||| ||||| || ||||||||||| |||| || Sbjct 666190 AGGGTTCGCCCATCTTCAAGTTGCTTGCCGGCAAAAATGAGACGCTGCTGATCGGGAGGG 666249 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTG-TTTGA 39208 | | |||||||| | ||| ||| || ||||| Sbjct 666250 ATACCCTCTTTGT-CTTGAATTTTTGCTTTGA 666280 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 |||||||| || |||||||| | | ||| || | || |||||||||||||| ||||| Sbjct 667615 TCTTTTTGGATGTTATAATCTGATAATGTACGCCCATCTTCAAGCTGTTTGCCGGCAAAA 667674 Query 39154 ATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTC 39213 || | |||||| ||||| | || | | |||||| || |||||| || | | Sbjct 667675 ATTAAACGCTGTTGGTCAGGTGGAATACCCTCTTTATCTTGGATTTTTGCCTTTACATTT 667734 Query 39214 GCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACA 39273 | | || || || | ||| || || | ||||| ||||||| || | ||||| ||| Sbjct 667735 TCTATGGTGTCACTAGGCTCAACTTCTAATGTGATGGTTTTTCCAGTTAAAGTTTTGACA 667794 Query 39274 AAGATTTGCAT 39284 || |||||||| Sbjct 667795 AAAATTTGCAT 667805 >seq435 Length=3082058 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 39061 CCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGT 39120 ||||| || |||| ||||| || ||||| |||||||| || | |||||| | || Sbjct 740602 CCTCTCAAACGTAGCACCATGTGAAGCGTTGATTCTTTTTGAATGTCATAATCTGATAGA 740661 Query 39121 GTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACG 39180 || |||| |||||| | ||| || ||||||||||| || | || || || | || | Sbjct 740662 GTGCGTTTGTCATCCAACTGCTTACCCGCAAATATCAGCCTTTGTTGATCTGGAGGAATT 740721 Query 39181 CTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCC 39240 | |||| || ||||| ||||| | | | || || |||||| || || Sbjct 740722 CCTTCTTCATCTTGAATTTTTTGTTTCACAATATTGATGGTGTCAGACGACTCTACTTCA 740781 Query 39241 ACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTAC 39290 | || || ||||||| ||||| ||||| ||||| || ||||| || || Sbjct 740782 AGAGTTATTGTTTTTCCAGTCAGGGTTTTTACAAAAATATGCATTTTCAC 740831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429459048306629