Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parasteatoda_20tepidariorum_20[refseq_20GCF_5F000365465.2_202017-04- 14] 16,533 sequences; 1,445,396,121 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq546 163 4e-35 seq14474 127 3e-24 seq16166 98.7 1e-15 seq3186 91.5 2e-13 >seq546 Length=398126 Score = 163 bits (180), Expect = 4e-35 Identities = 162/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 47013 CAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAA 47072 ||| || ||||| || |||||||| || ||||||||||| || || | ||| || || Sbjct 243758 CAAGTTTTCATTTACAATTCCATCGCTTGCAGCAAAAAAGGCTAAGATATGAGAGATGAA 243699 Query 47073 ATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTC 47132 | |||||| || | ||||||| | ||||||| | |||||||||| ||||||||| Sbjct 243698 GTGTTTTTCTTCTGATTTCAGTTTTTCCCAGTCAGAAAAGTCTTTTGATAGATCTACTTC 243639 Query 47133 TTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACGATATTG 47192 ||| | |||||||| |||||||||||||| |||||||| | ||| ||||| |||||| Sbjct 243638 TTCTACGGTCCAGAAAGACGCCTCTGCTTTCTTATACATCTGCCACATATCTTGATATTC 243579 Query 47193 GATCGGAAAAATAACAAATCTATTTGGATT 47222 || ||||| |||||||| ||| ||||| Sbjct 243578 AATGGGAAAGATAACAAACCTACGGGGATT 243549 Score = 118 bits (130), Expect = 2e-21 Identities = 160/221 (72%), Gaps = 3/221 (1%) Strand=Plus/Minus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||| || |||||||| ||| |||||||| |||||||| || || | ||| || Sbjct 248754 TCATCTCTGCTGATTAATTCATTACTGAATGTGAGACCAGGCATAAGACCTCTCTTCTTC 248695 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 | ||| || |||| || || || ||||| || ||||||||||| || || || ||||| Sbjct 248694 AACCAGAAAATAGATGCAAAGGAGCCAGAGAAAAATATGCCTTCCACGGCTGCAAATGCA 248635 Query 46774 ACAAGTCTCTCTCCGTAACTGGCA-TCAT--TATGAATCCACCTTTGAGCCCAATCAGCC 46830 |||| ||| ||||| | ||| || | || ||||| | | ||||| || ||| Sbjct 248634 ACAACTCTTTCTCCAAAGGAAGCATTCGTGCTACTGATCCAGTTCAGCGCCCAGTCCGCC 248575 Query 46831 TTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAG 46871 || | || ||||| |||| ||||| || ||||| || || Sbjct 248574 TTCCTTTTAACACAGGGCAAAGTTTCGATCGCATTGAACAG 248534 Score = 111 bits (122), Expect = 2e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 46891 TCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCC 46950 ||||||||||||||||| ||||| | || |||||||||||||| | || |||||||| Sbjct 245615 TCTTTAACATATGTATCAATTAACAAGCTGTACATTTCTGAATGGACATTCTCAATAGCT 245556 Query 46951 ATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTC 47009 || ||||| || ||||||||||| || || |||| ||| || ||| || |||||||| Sbjct 245555 ATTTGAAAACCATAAAAACATCTGGCCTCTGTAACCTGAACTTCTTGACTGAATCGTTC 245497 >seq14474 Length=2471489 Score = 127 bits (140), Expect = 3e-24 Identities = 117/148 (79%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 75438 CCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATAT 75497 ||||| ||| |||||||||||||||||||| | || |||| | || || || |||| Sbjct 1671505 CCAGATGCCAGCCGTAGAAATGCATGCTTGTGATCTTTCCATAATTAGGTTCAGCAATAT 1671564 Query 75498 GAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAA 75557 | | ||||| ||||| |||||||| ||| |||||||||||||||| |||||||| | | Sbjct 1671565 GCACATTCAAGGACTGGCTTTGATCAATGTAAGCTCCTCTATCAGCAGCCATTTTCAATA 1671624 Query 75558 TGGTCTTTTGAGGAATTTCCCAAATAGT 75585 | | || |||||||||||||| | ||| Sbjct 1671625 TATTTTTCTGAGGAATTTCCCAGACAGT 1671652 Score = 125 bits (138), Expect = 1e-23 Identities = 108/134 (81%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 || ||||| ||||| || ||||||| |||||| |||||||| || || ||||| | ||| Sbjct 1672517 TGGAATTCACCAGATAAGACTCTTCTAGTGTAGATATTACTTGTGTAAGGTTCAATTGAT 1672576 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 ||||| ||||| | ||| ||||| ||||| ||||| |||||||| || | || |||||| Sbjct 1672577 TCATTATTTCCAAGAATCTGAGCTGTTGATGCAGTTGGCATAGGCGCTAATAACAAACTA 1672636 Query 75842 TTTCTGAGACCATG 75855 ||||| | |||||| Sbjct 1672637 TTTCTAACACCATG 1672650 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 76510 ATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACA 76569 ||| | | |||||||||| || ||||| ||||| | ||||| |||||| || || Sbjct 1696355 ATAAAGCTGTTCAAATTCTTCACCCCAGCAATCATGGAGCCCAGGTGATTCATCAGGGCA 1696414 Query 76570 CATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAG 76629 ||| | |||| |||| | | ||||| | |||||| | |||||||||||| | Sbjct 1696415 CATAAGACTCCACATTTCATCCTTTTCAACCCTCTGCATAAATAAATCAGGTATCCACAA 1696474 Query 76630 AGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAG 76689 ||| ||| | ||||| | | |||| || || || || |||||||| | ||| || Sbjct 1696475 TGCATAAAACAAATCTCTTGCACGTTGTTCCTCTTTGCCAGTGTTCTTTTTCAAATCAAG 1696534 Query 76690 GAACTCCATAATATCAGAATGCCATGGTTCTA 76721 ||| || | |||||||| |||||| || |||| Sbjct 1696535 GAAGTCAAAAATATCAGCATGCCAAGGCTCTA 1696566 Score = 98.7 bits (108), Expect = 1e-15 Identities = 124/167 (74%), Gaps = 4/167 (2%) Strand=Plus/Plus Query 77338 GCTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAAT 77397 ||||||| ||| || ||||| ||||| ||||| || | || |||| |||||||||||| Sbjct 1721250 GCTAAATGTTTTCTTCGTTTCTTTGTGCAGATTGGAGATAGCAATTCGAGCAGCTAGAAT 1721309 Query 77398 TGCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAA 77457 |||||||| ||||| | |||||| || || || ||||| || |||| |||||| Sbjct 1721310 AGCATAGTCTGGATGCTTTGTAGTCATAGTAGCAGCAATTTCAGCAGCTAGGTTATCTAG 1721369 Query 77458 TTCTATAGTAGTAACTCCGTTATA-TAGCC-CTTGAATAACTTTCAT 77502 ||| | ||||| || || ||| |||| ||| || |||||||| Sbjct 1721370 TTCAACTGTAGTGACACCAGGATACAAGCCACTT--ATTACTTTCAT 1721414 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 ||||| | ||| || | |||||| || ||||| ||||||||||| || || | || || Sbjct 1702637 GTTCCAGAATTGAAAAGTGTAGGGGAGGCATGCGTGAACCATTTCTCTGACATTAAATGA 1702696 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 ||||||||||| | || || ||||| |||||| || || | || | ||||||| Sbjct 1702697 TATGTTTCAATGGCAGCATCAATATCATCAGAATGAATACCAACCGATACTCTCATCAAC 1702756 Query 77114 ATATGCTGAGGTCGTTCTAC 77133 |||||||| |||||||| || Sbjct 1702757 ATATGCTGTGGTCGTTCAAC 1702776 Score = 87.8 bits (96), Expect = 3e-12 Identities = 109/148 (74%), Gaps = 6/148 (4%) Strand=Plus/Plus Query 76160 GGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATTTC---TGACAACTACTTTA 76216 |||| ||| |||||||| | |||||| ||||| || || || ||| |||| || Sbjct 1692466 GGAACAGGATAATAATTTACATCTATGATTTTGTTTAGGTTAACAGTGATAACT---TTG 1692522 Query 76217 ACCACGTCCTTTAGTTTGAGAAAATCAAATTTTCCATCTATCACAAACATATTAAGAGCT 76276 ||| || || || ||| ||||||||||| ||||||| ||||| | |||||||||| Sbjct 1692523 GTCACTTCTTTCAGCTTGCTAAAATCAAATTCTCCATCTTTCACATATCTATTAAGAGCA 1692582 Query 76277 ATAGATGCTAGATTACAAACGGCTACCT 76304 || || |||| ||| || || || |||| Sbjct 1692583 ATGGAGGCTAAATTGCATACAGCAACCT 1692610 >seq16166 Length=1540 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 76510 ATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACA 76569 ||| | | |||||||||| || ||||| ||||| | ||||| |||||| || || Sbjct 23 ATAAAGCTGTTCAAATTCTTCACCCCAGCAATCATGGAGCCCAGGTGATTCATCAGGGCA 82 Query 76570 CATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAG 76629 ||| | |||| |||| | | ||||| | |||||| | |||||||||||| | Sbjct 83 CATAAGACTCCACATTTCATCCTTTTCAACCCTCTGCATAAATAAATCAGGTATCCACAA 142 Query 76630 AGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAG 76689 ||| ||| | ||||| | | |||| || || || || |||||||| | ||| || Sbjct 143 TGCATAAAACAAATCTCTTGCACGTTGTTCCTCTTTGCCAGTGTTCTTTTTCAAATCAAG 202 Query 76690 GAACTCCATAATATCAGAATGCCATGGTTCTA 76721 ||| || | |||||||| |||||| || |||| Sbjct 203 GAAGTCAAAAATATCAGCATGCCAAGGCTCTA 234 >seq3186 Length=3123 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 ||||| | ||| || | ||||| || ||||| ||||||||||| || || | || || Sbjct 3078 GTTCCAGAATTGAAGAGCGTAGGGGAGGCATGTGTGAACCATTTCTCTGACATTAAATGA 3019 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 || |||||||| | || || ||||| |||||| || |||| || | ||||||| Sbjct 3018 TACGTTTCAATGGCAGCATCAATATCATCAGAATGAATACCAACAGACACTCTCATCAAC 2959 Query 77114 ATATGCTGAGGTCGTTCTAC 77133 |||||||| |||||||| || Sbjct 2958 ATATGCTGTGGTCGTTCAAC 2939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712787063194560