Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parhyale_20hawaiensis_20[genbank_20GCA_5F001587735.1_202016-03-11] 976,695 sequences; 4,023,757,376 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq6977 116 3e-21 >seq6977 Length=186913 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || |||||||| || | ||| | || || || |||||||| |||||||||| Sbjct 62538 CCACCACGAAGCCTGAGGACAAGATGGAGGGTAGATTCTTTTTGAATATTATAGTCCGAT 62479 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || |||| |||| ||| || || || ||||||| | || ||||| ||| Sbjct 62478 AGAGTGCGGCCGTCTTCCAACTGCTTACCGGCGAAAATAAGACGTTGTTGGTCGGGGGGA 62419 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGT- 21127 | |||||||||||| |||||| ||| || | ||| ||||| | |||| || Sbjct 62418 ATGCCTTCCTTGTCCTGAATCTTTGCTTTGACGTTTTCGATGGTATC-CGAGGCTTCGAC 62360 Query 21128 TTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||| | ||| ||||||||||| || | || ||||| || |||||||| Sbjct 62359 TTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAAATTTGCAT 62312 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| |||||||| | ||| | ||||| || || || || || ||||||| Sbjct 61197 CCACCACGCAGTCTGAGCACGAGATGAAGGGTGGATTCTTTCTGGATATTGTAGTCCGAA 61138 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | || |||||||| ||||| || ||||||| | ||| ||||| ||| Sbjct 61137 AGTGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAAATAAGACGCTGTTGGTCGGGGGGA 61078 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||| || |||||| ||||| | | | ||||||| || ||| | Sbjct 61077 ATACCTTCCTTATCCTGGATCTTAGCCTTCACATTTTCAATAGTATCAGAGGCCTCGACT 61018 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| |||||||||||||| | || || || || || ||||| Sbjct 61017 TCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 60971 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || |||||||| || | ||| | ||||| ||||| ||||| || || || | | Sbjct 61653 CCTCCACGAAGCCTGAGGACAAGATGGAGGGTGGATTCCTTCTGAATATTGTAATCAGAC 61594 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | |||| |||| || ||||| ||| ||||||| | ||||||||| || Sbjct 61593 AGAGTGCGACCGTCTTCCAATTGCTTGCCGGCAAAAATAAGACGCTGCTGGTCGGGAGGG 61534 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| ||||||| ||||| | | | || || | ||| | Sbjct 61533 ATTCCTTCCTTGTCCTGGATCTTTGCCTTCACATTTTCAATGGTGTCCGAAGCCTCTACT 61474 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| |||||| ||||||||||| | || || || || |||||||| Sbjct 61473 TCCAGGGTAATAGTCTTGCCGGTGAGGGTCTTAACGAAAATTTGCAT 61427 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || ||||| || | ||||||| || | |||||| ||||||||||| || ||||| | | Sbjct 61425 CCGCCTCGAAGACGCAGCACCAAGTGAAGAGTGGATTCCTTTTGAATATTGTAGTCAGAC 61366 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | |||| |||| ||||||||| ||| | ||||| | ||||||||| || Sbjct 61365 AGGGTACGACCGTCTTCCAACTGTTTGCCAGCAAAGATAAGACGCTGCTGGTCAGGAGGA 61306 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||| || || || || || | | | || || | || | Sbjct 61305 ATGCCTTCCTTATCTTGAATTTTAGCCTTTACATTCTCAATGGTGTCTGAAGCTTCGACT 61246 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| || ||||| ||||||| ||||| ||||| || ||||| Sbjct 61245 TCCAAGGTGATTGTCTTACCGGTTAGAGTTTTAACAAAAATCTGCAT 61199 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| ||| | |||||||||||| || || || ||||| | ||||| || | || Sbjct 63207 AGAACCAAATGGAGAGTGGACTCCTTCTGGATATTGTAGTCAGAAAGGGTGCGGCCATCT 63148 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||||||||| ||| | || || | ||||||||| ||| | |||||||| || Sbjct 63147 TCCAGCTGTTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGGGGAATACCTTCCTTATCC 63088 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||||||| ||||| | | | |||||| || ||| || | ||| || || Sbjct 63087 TGGATCTTTGCCTTCACATTTTCAATAGTATCCGAGGCCTCGACCTCAAGGGTGATTGTT 63028 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||||||| | || || || || || ||||| Sbjct 63027 TTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 62996 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || |||||||| ||||| | ||| | || || || || || || || || || | Sbjct 62994 CCGCCACGCAGCCTAAGCACAAGATGGAGGGTCGATTCTTTCTGGATATTGTAATCAGAG 62935 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | || |||||||||||||| ||| | || || | ||||||||| ||| Sbjct 62934 AGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAGATGAGACGCTGCTGGTCGGGGGGA 62875 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG-T 21127 | |||||||||||| |||||| ||||| | | | || || | |||| || Sbjct 62874 ATGCCTTCCTTGTCCTGGATCTTAGCCTTCACGTTCTCAATGGTGTC-CGAGGCTTCGAC 62816 Query 21128 TTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||| | ||| ||||||||||| || | ||||| || || || ||||| Sbjct 62815 TTCGAGGGTGATGGTCTTGCCAGTCAGGGTTTTAACGAAAATCTGCAT 62768 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || |||||||| ||||| | ||| | || || || || || || || || || | Sbjct 60969 CCGCCACGCAGCCTAAGCACAAGATGGAGGGTAGATTCTTTCTGGATATTGTAATCAGAG 60910 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | |||||||||| || ||||| ||| | || || | ||||||||| ||| Sbjct 60909 AGGGTACGTCCGTCCTCCAGTTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCGGGGGGA 60850 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| |||||| ||||| | | | || ||| || || | Sbjct 60849 ATGCCTTCCTTGTCCTGGATCTTAGCCTTCACGTTCTCAATGGTGTCAGAGGCTTCAACT 60790 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || ||||||||||| |||| ||||| || || || ||||| Sbjct 60789 TCGAGCGTGATGGTCTTGCCAGTTAGGGTTTTCACGAAGATCTGCAT 60743 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| |||||||| | || | ||| ||||||||||| || || || || | Sbjct 62082 CCACCACGCAGTCTGAGCACAAGGTGGAGAGTAGACTCCTTTTGGATATTGTAATCAGAG 62023 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | | || |||||||||||||| ||| | || || | ||||||||| ||| Sbjct 62022 AGGGTACGACCATCTTCCAGCTGTTTGCCAGCAAAGATGAGACGCTGCTGGTCGGGGGGA 61963 Query 21069 ACGCCTTCCTTGTCGGCGATCTT 21091 | |||||||||||| |||||| Sbjct 61962 ATGCCTTCCTTGTCCTGGATCTT 61940 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||||||| | ||||||| |||| |||||||||||||| || || ||||| | | Sbjct 61881 CCTCCTCGCAGACGCAGCACCAAGTGCAGGGTGGACTCCTTTTGGATATTGTAGTCTGAC 61822 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | || | | || || ||||| ||||| || | ||||| | ||| ||||| ||| Sbjct 61821 AAAGTACGACCATCTTCAAGCTGCTTGCCGGCGAAGATAAGACGCTGTTGGTCGGGGGGA 61762 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||| || ||||||| ||||| | | | || || | ||| | Sbjct 61761 ATACCTTCCTTATCCTGGATCTTTGCCTTCACGTTTTCAATGGTGTCCGAAGCCTCGACT 61702 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| || ||||| ||||| | || || || || |||||||| Sbjct 61701 TCCAGGGTGATTGTCTTTCCGGTGAGGGTCTTCACGAAAATTTGCAT 61655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 417232850148620