Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parhyale_20hawaiensis_20[genbank_20GCA_5F001587735.1_202016-03-11] 976,695 sequences; 4,023,757,376 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq6977 149 6e-31 seq7011 140 3e-28 >seq6977 Length=186913 Score = 149 bits (164), Expect = 6e-31 Identities = 161/211 (76%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| || || ||||| ||||||||| |||| ||||||||| | Sbjct 62768 ATGCAGATTTTCGTTAAAACCCTGACTGGCAAGACCATCACCCTCGAAGTCGAAGCCTCG 62827 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | ||||| || ||||| ||| | ||||| Sbjct 62828 GACACCATTGAGAACG-TGAAGGCTAAGATCCAGGACAAGGAAGGCATTCCCCCCGACCA 62886 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||||| || |||||||||||||| || | ||||||||| || ||||| Sbjct 62887 GCAGCGTCTCATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACCCTCTCTGATTACAA 62946 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 |||||||| || | || || ||||| ||| Sbjct 62947 TATCCAGAAAGAATCGACCCTCCATCTTGTG 62977 Score = 136 bits (150), Expect = 4e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||||||||| ||||| ||||| ||||||||| |||| |||||||| | Sbjct 62540 ATGCAAATCTTCGTAAAAACACTCACTGGCAAGACCATCACCCTCGAAGTCGAAGCTTCA 62599 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | ||| | |||| ||| || | || || || || || ||| | || ||| Sbjct 62600 GACACCATAGAAAATGTAAAGGCAAAGATCCAGGATAAGGAAGGTATTCCCCCCGATCAG 62659 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| ||||| ||||| || || | || || | |||||||| Sbjct 62660 CAGCGTCTTATCTTCGCCGGCAAGCAGCTTGAAGATGGTCGTACTTTGTCAGACTACAAT 62719 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||| |||||| |||| ||||| | ||| |||| Sbjct 62720 ATCCAAAAGGAGTCCACCCTGCACTTGGTGCTGCG 62754 Score = 136 bits (150), Expect = 4e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| |||||||| |||||| | || ||||| ||| | Sbjct 62996 ATGCAGATCTTCGTGAAGACCCTCACCGGCAAAACAATCACCCTTGAGGTCGAGGCCTCG 63055 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | ||| | |||| ||| || | || || || || || ||| | |||||| Sbjct 63056 GATACTATTGAAAATGTGAAGGCAAAGATCCAGGATAAGGAAGGTATTCCCCCCGACCAG 63115 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || ||||||| || |||||||||||||| || | |||||||| |||||||| Sbjct 63116 CAGCGTCTCATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACCCTTTCTGACTACAAT 63175 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||||| |||| || ||| | || |||| Sbjct 63176 ATCCAGAAGGAGTCCACTCTCCATTTGGTTCTGCG 63210 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| || || ||||| || || || | || || |||||| | Sbjct 62084 ATGCAGATTTTCGTGAAAACCCTGACCGGCAAGACGATTACTCTTGAAGTGGAAGCCTCG 62143 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | || || | | |||| ||||||| |||||||| ||||| ||| | ||||| Sbjct 62144 GATACGATTGAGAATG-TGAAGGCTAAAATTCAGGACAAAGAAGGCATTCCCCCCGACCA 62202 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || || |||| ||| || || ||||| || |||| |||||| | |||||||| Sbjct 62203 ACAGCGTCTGATCTTCGCCGGTAAGCAGCTTGAAGACGGCCGCACCTTGTCAGACTACAA 62262 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||| || || || | || || || | ||| | || ||||| || || Sbjct 62263 CATTCAAAAAGAATCGACCCTTCACTTGGTGCTACGTTTGAGAGGTGG 62310 Score = 96.9 bits (106), Expect = 4e-15 Identities = 120/162 (74%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 40739 TCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATC 40797 |||||||| | |||| | | | |||| | |||| || || | ||||| || ||||| Sbjct 61905 TCGAAGCCTCGGACACCATTGAGAACG-TGAAGGCTAAGATCCAGGACAAGGAAGGCATT 61963 Query 40798 CCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTC 40857 ||| | |||||||| || ||||||| || |||||||||||||| || | || |||||| Sbjct 61964 CCCCCCGACCAGCAGCGTCTCATCTTTGCTGGCAAACAGCTGGAAGATGGTCGTACCCTC 62023 Query 40858 AACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 || ||||| ||||| |||||| | || || || || ||| Sbjct 62024 TCTGATTACAATATCCAAAAGGAGTCTACTCTCCACCTTGTG 62065 >seq7011 Length=120798 Score = 140 bits (154), Expect = 3e-28 Identities = 125/157 (80%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 117047 GCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTC 117106 ||||| || || || ||||| |||| || || || |||||| |||| || ||||| Sbjct 26910 GCCTTTGCCGCAGTTGAGGGAATCTTTTTCTCCGGGTCCTTCGCCTCCATCTTCTGGCTG 26969 Query 117107 AAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAG 117166 ||||| |||||||| |||||||||||||| |||||||||||||| |||||| |||||||| Sbjct 26970 AAGAAGCGCGGCCTGATGCCCGGCCTGACCTTCAGCAACGAGCTTATCTCCCGGGACGAG 27029 Query 117167 GGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGC 117203 || || || |||||||||||| | ||| ||||| Sbjct 27030 GGGCTCCACACCGACTTTGCCTGCCTTATGTACAAGC 27066 Score = 93.3 bits (102), Expect = 4e-14 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 116735 GAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAAC 116794 |||| || |||||| |||||||||||||| || || ||| ||||||||||||||| Sbjct 24106 GAGCATCACTTCATCTCCCACGTGCTGGCCTTCTTTGCTGCCTCGGACGGCATCGTCAAC 24165 Query 116795 GAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTG 116833 ||||| ||||| ||| | ||| ||||||||||||||| Sbjct 24166 GAGAACCTGGTGGAGAGGTTCTGCCAGGAGGTGCAGGTG 24204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 508929049793200