Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parhyale_20hawaiensis_20[genbank_20GCA_5F001587735.1_202016-03-11] 976,695 sequences; 4,023,757,376 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq6977 143 3e-29 >seq6977 Length=186913 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| ||||| | || || |||| || ||||||||||| |||||||| || | Sbjct 62310 CCACCTCTCAAACGTAGCACCAAGTGAAGGGTCGATTCTTTTTGAATGTTGTAGTCTGAC 62251 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| |||||| || || ||||| || |||||||||| || || ||||| || Sbjct 62250 AAGGTGCGGCCGTCTTCAAGCTGCTTACCGGCGAAGATCAGACGCTGTTGGTCGGGGGGA 62191 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||||||||| |||||| || | | || | ||| |||| || ||| ||| Sbjct 62190 ATGCCTTCTTTGTCCTGAATTTTAGCCTTCACATTCTCAATCGTATCCGAGGCTTCCACT 62131 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| ||| | |||||||||||||| ||||| ||||| || ||||| Sbjct 62130 TCAAGAGTAATCGTCTTGCCGGTCAGGGTTTTCACGAAAATCTGCAT 62084 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 |||||||| | ||||| || || || | || || || ||||| || ||||| || | Sbjct 62766 CCTCCTCGCAGACGCAGCACCAAGTGCAGGGTGGACTCCTTTTGGATATTGTAGTCTGAC 62707 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | ||||| || || || || || |||| ||||| ||||||||||| || Sbjct 62706 AAAGTACGACCATCTTCAAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGATCGGGGGGA 62647 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| || || || ||| |||| | ||| | ||||| | | ||| ||| Sbjct 62646 ATACCTTCCTTATCCTGGATCTTTGCCTTTACATTTTCTATGGTGTCTGAAGCTTCGACT 62587 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | |||||||| || | |||||||||||| ||||||||| Sbjct 62586 TCGAGGGTGATGGTCTTGCCAGTGAGTGTTTTTACGAAGATTTGCATA 62539 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 |||||||||||||| || || || || | |||| |||||| | || ||||| Sbjct 62508 GTAGATTCTTTTTGAATATTATAGTCCGATAGAGTGCGGCCGTCTTCCAACTGCTTACCG 62449 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || | || |||||||| || ||||| || |||||||| ||||| ||| ||| ||| Sbjct 62448 GCGAAAATAAGACGTTGTTGGTCGGGGGGAATGCCTTCCTTGTCCTGAATCTTTGCTTTG 62389 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | ||| | || |||| || ||| ||||| | || | |||||||| || | || Sbjct 62388 ACGTTTTCGATGGTATCCGAGGCTTCGACTTCGAGGGTGATGGTCTTGCCAGTGAGGGTC 62329 Query 143168 TTTACGAATATTTGCATA 143185 || ||||| ||||||||| Sbjct 62328 TTGACGAAAATTTGCATA 62311 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || ||||| || || || |||||||| || |||| |||||| | ||| || || Sbjct 61623 GTGGATTCCTTCTGAATATTGTAATCAGACAGAGTGCGACCGTCTTCCAATTGCTTGCCG 61564 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| | || ||||| ||||| |||||||| || ||||| ||||| || ||| || Sbjct 61563 GCAAAAATAAGACGCTGCTGGTCGGGAGGGATTCCTTCCTTGTCCTGGATCTTTGCCTTC 61504 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | ||| | ||||||| | |||||||| | || | ||||||||||| | || Sbjct 61503 ACATTTTCAATGGTGTCCGAAGCCTCTACTTCCAGGGTAATAGTCTTGCCGGTGAGGGTC 61444 Query 143168 TTTACGAATATTTGCAT 143184 || ||||| |||||||| Sbjct 61443 TTAACGAAAATTTGCAT 61427 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 ||||||||||| || || |||||||| | || | ||| || ||||| || ||| Sbjct 60939 GTAGATTCTTTCTGGATATTGTAATCAGAGAGGGTACGTCCGTCCTCCAGTTGCTTGCCA 60880 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| |||| ||||| ||||| ||||| || |||||||| ||||| || || || Sbjct 60879 GCAAAGATGAGACGCTGCTGGTCGGGGGGAATGCCTTCCTTGTCCTGGATCTTAGCCTTC 60820 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| | || ||| ||||| | || | |||||||| || | ||| Sbjct 60819 ACGTTCTCAATGGTGTCAGAGGCTTCAACTTCGAGCGTGATGGTCTTGCCAGTTAGGGTT 60760 Query 143168 TTTACGAATATTTGCAT 143184 || ||||| || ||||| Sbjct 60759 TTCACGAAGATCTGCAT 60743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500824419632400