Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Parhyale_20hawaiensis_20[genbank_20GCA_5F001587735.1_202016-03-11]
976,695 sequences; 4,023,757,376 total letters
Query= NC_004690.1
Length=113220
Score E
Sequences producing significant alignments: (Bits) Value
seq6977 120 2e-22
>seq6977
Length=186913
Score = 120 bits (132), Expect = 2e-22
Identities = 165/229 (72%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196
||||||||||| | || || || |||||||| || |||||||| |||||||| || |
Sbjct 62310 CCACCTCTCAAACGTAGCACCAAGTGAAGGGTCGATTCTTTTTGAATGTTGTAGTC--TG 62253
Query 15197 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254
| || || ||||||| | || || || ||| | |||| ||| ||||||||| |
Sbjct 62252 ACAAGGTGCGGCCGTCTTCAAGCTGCTTACCGGCGAAGATCAGACGCTGTTGGTCGGGGG 62193
Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314
|||| ||||||||||| |||||| ||| ||| | || || ||||| ||| |
Sbjct 62192 GAATGCCTTCTTTGTCCTGAATTTTAGCCTTCACATTCTCAATCGTATCCGAGGCTTCCA 62133
Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
| || | ||||| || || || ||||| ||||| || ||||| |||||
Sbjct 62132 CTTCAAGAGTAATCGTCTTGCCGGTCAGGGTTTTCACGAAAATCTGCAT 62084
Score = 113 bits (124), Expect = 3e-20
Identities = 151/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214
|| || ||||| ||||| || ||||| || ||||| || || | | |||||||
Sbjct 61407 ACCAAGTGAAGAGTGGATTCCTTTTGAATATTGTAGTCAGACAGGGTACGACCGTCTTCC 61348
Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274
|| ||||||||||| | || | ||| || ||||| ||||| ||||| || || |
Sbjct 61347 AACTGTTTGCCAGCAAAGATAAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTATCTTGA 61288
Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334
||||| ||||||| | || ||||| || | ||| || || ||||| || || |||
Sbjct 61287 ATTTTAGCCTTTACATTCTCAATGGTGTCTGAAGCTTCGACTTCCAAGGTGATTGTCTTA 61228
Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364
|| || |||||||| |||||||| ||||||
Sbjct 61227 CCGGTTAGAGTTTTAACAAAAATCTGCATA 61198
Score = 107 bits (118), Expect = 1e-18
Identities = 149/206 (72%), Gaps = 2/206 (1%)
Strand=Plus/Minus
Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219
||| ||||| || |||||||| || || || || |||| | | ||||||| || ||
Sbjct 62515 ATGGAGGGTAGATTCTTTTTGAATATTATAGTCCGATAGAGTGCGGCCGTCTTCCAACTG 62456
Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TT 15278
|| || ||| | || | ||||||||||||| ||||| ||||| ||||| ||| ||
Sbjct 62455 CTTACCGGCGAAAATAAGACGTTGTTGGTCGGGGGGAATGCCTTCCTTGTCCTGAATCTT 62396
Query 15279 TGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTG 15338
|||| || || |||| |||||||| ||| || || | ||| ||||| || || |
Sbjct 62395 TGCT-TTGACGTTTTCGATGGTATCCGAGGCTTCGACTTCGAGGGTGATGGTCTTGCCAG 62337
Query 15339 TCAGAGTTTTTACAAAAATTTGCATA 15364
| || || || || ||||||||||||
Sbjct 62336 TGAGGGTCTTGACGAAAATTTGCATA 62311
Score = 102 bits (112), Expect = 6e-17
Identities = 147/205 (72%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219
||| |||||||| || || || || |||||||| ||| | | ||||||| |||||
Sbjct 61630 ATGGAGGGTGGATTCCTTCTGAATATTGTAATCAGACAGAGTGCGACCGTCTTCCAATTG 61571
Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TT 15278
||||| || | || | ||| || |||||| || |||||||| ||||| || ||
Sbjct 61570 CTTGCCGGCAAAAATAAGACGCTGCTGGTCGGGAGGGATTCCTTCCTTGTCCTGGATCTT 61511
Query 15279 TGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTG 15338
||| ||| ||| |||| ||||| || | ||||| || | |||||| || || || |
Sbjct 61510 TGC-CTTCACATTTTCAATGGTGTCCGAAGCCTCTACTTCCAGGGTAATAGTCTTGCCGG 61452
Query 15339 TCAGAGTTTTTACAAAAATTTGCAT 15363
| || || || || |||||||||||
Sbjct 61451 TGAGGGTCTTAACGAAAATTTGCAT 61427
Score = 82.4 bits (90), Expect = 5e-11
Identities = 141/205 (69%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219
||| ||||| || ||||| || || |||||||| || | | | ||||| | ||
Sbjct 62971 ATGGAGGGTCGATTCTTTCTGGATATTGTAATCAGAGAGGGTGCGGCCATCTTCCAGCTG 62912
Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279
||||||||| | || | ||| || |||||| ||||| ||||| ||||| || ||
Sbjct 62911 TTTGCCAGCAAAGATGAGACGCTGCTGGTCGGGGGGAATGCCTTCCTTGTCCTGGATCTT 62852
Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339
||| || | || ||||| || ||| || || | ||| ||||| || || ||
Sbjct 62851 AGCCTTCACGTTCTCAATGGTGTCCGAGGCTTCGACTTCGAGGGTGATGGTCTTGCCAGT 62792
Query 15340 CAGAGTTTTTACAAAAATTTGCATA 15364
||| ||||| || ||||| ||||||
Sbjct 62791 CAGGGTTTTAACGAAAATCTGCATA 62767
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 357868010644995
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |