Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parhyale_20hawaiensis_20[genbank_20GCA_5F001587735.1_202016-03-11] 976,695 sequences; 4,023,757,376 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq6977 84.2 2e-11 >seq6977 Length=186913 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 ||||| || ||||||||||| || |||| | || | |||| |||| ||| ||||| Sbjct 62508 GTAGATTCTTTTTGAATATTATAGTCCGATAGAGTGCGGCCGTCTTCCAACTGCTTACCG 62449 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 || ||||||| | || || || ||| | ||| || ||||| ||| || ||| Sbjct 62448 GCGAAAATAAGACGTTGTTGGTCGGGGGGAATGCCTTCCTTGTCCTGAATCTTTGCTTTG 62389 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCG-TTTCGACGGTAATGGTTTTACCTGTTAAAGT 19023 || | ||| ||||| | ||||| || ||||| ||| ||||| || || || | || Sbjct 62388 ACGTTTTCGATGGTATC-CGAGGCTTCGACTTCGAGGGTGATGGTCTTGCCAGTGAGGGT 62330 Query 19024 TTTGACAAAAATTTGCAT 19041 ||||| ||||||||||| Sbjct 62329 CTTGACGAAAATTTGCAT 62312 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | || || ||||||||||||||||| || | || || |||| || Sbjct 61408 CACCAAGTGAAGAGTGGATTCCTTTTGAATATTGTAGTCAGACAGGGTACGACCGTCTTC 61349 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 || |||||| || ||| | ||||| | |||||| || || | ||| || || || Sbjct 61348 CAACTGTTTGCCAGCAAAGATAAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTATCTTG 61289 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 |||||| ||||| | | | || || || || ||| | ||| || || || Sbjct 61288 AATTTTAGCCTTTACATTCTCAATGGTGTCTGAAGCTTCGACTTCCAAGGTGATTGTCTT 61229 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| |||| |||||| |||||||| ||||| Sbjct 61228 ACCGGTTAGAGTTTTAACAAAAATCTGCAT 61199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409637944982830