Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parhyale_20hawaiensis_20[genbank_20GCA_5F001587735.1_202016-03-11] 976,695 sequences; 4,023,757,376 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq6977 100 2e-16 >seq6977 Length=186913 Score = 100 bits (110), Expect = 2e-16 Identities = 162/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| ||||| || || | |||||| || | ||||| |||||||| || ||||| || || Sbjct 62311 ACCACCTCTCAAACGTAGCACCAAGTGAAGGGTCGATTCTTTTTGAATGTTGTAGTCTGA 62252 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 ||| || | ||| || | ||||| || || || | ||| || ||||| | ||| Sbjct 62251 CAAGGTGCGGCCGTCTTCAAGCTGCTTACCGGCGAAGATCAGACGCTGTTGGTCGGGGGG 62192 Query 33262 TATGCCTTCTTTTTCGCTAA---TCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318 ||||||||||| || || | ||| || || | | |||||| || || || Sbjct 62191 AATGCCTTCTTTGTCCTGAATTTTAGCC---TTCACATTCTCAATCGTATCCGAGGCTTC 62135 Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || || ||||| ||||| || || || || ||||| |||||||| |||||| Sbjct 62134 CACTTCAAGAGTAATCGTCTTGCCGGTCAGGGTTTTCACGAAAATCTGCATG 62083 Score = 91.5 bits (100), Expect = 9e-14 Identities = 160/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 |||||| | | || | ||| | ||| | || || ||||| || |||||||||||||| Sbjct 60970 ACCGCCACGCAGCCTAAGCACAAGATGGAGGGTAGATTCTTTCTGGATATTGTAATCAGA 60911 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 | | || ||| |||| |||||| ||| ||| || | ||| |||||||| | ||| Sbjct 60910 GAGGGTACGTCCGTCCTCCAGTTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCGGGGGG 60851 Query 33262 TATGCCTTCTTTTTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318 |||||||| || || | | | ||| || || | | ||| ||||| || || Sbjct 60850 AATGCCTTCCTTGTCCTGGATCTTAGCC---TTCACGTTCTCAATGGTGTCAGAGGCTTC 60794 Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 ||| || || || || || || || || || ||||| ||||| || |||||| Sbjct 60793 AACTTCGAGCGTGATGGTCTTGCCAGTTAGGGTTTTCACGAAGATCTGCATG 60742 Score = 84.2 bits (92), Expect = 1e-11 Identities = 140/201 (70%), Gaps = 6/201 (3%) Strand=Plus/Minus Query 33173 GTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCA 33232 || || || || || |||||||||||||||| | || | ||| ||||||||||| || Sbjct 61623 GTGGATTCCTTCTGAATATTGTAATCAGACAGAGTGCGACCGTCTTCCAATTGCTTGCCG 61564 Query 33233 CTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC---GCTAATCGCCTGT 33289 ||| || | ||| |||||||| | || || ||||| || || | | | ||| Sbjct 61563 GCAAAAATAAGACGCTGCTGGTCGGGAGGGATTCCTTCCTTGTCCTGGATCTTTGCC--- 61507 Query 33290 TTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGA 33349 || || ||| ||| ||||| | | || ||||| || || || || || || || Sbjct 61506 TTCACATTTTCAATGGTGTCCGAAGCCTCTACTTCCAGGGTAATAGTCTTGCCGGTGAGG 61447 Query 33350 GTTTTTACGAAAATTTGCATG 33370 || || ||||||||||||||| Sbjct 61446 GTCTTAACGAAAATTTGCATG 61426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314983040302110