Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parhyale_20hawaiensis_20[genbank_20GCA_5F001587735.1_202016-03-11] 976,695 sequences; 4,023,757,376 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq6977 86.0 4e-12 >seq6977 Length=186913 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTC 43971 |||||| || || ||| || ||||||||||| || || | ||| | || || Sbjct 61408 CACCAAGTGAAGAGTGGATTCCTTTTGAATATTGTAGTCAGACAGGGTACGACCGTCTTC 61349 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031 ||| ||||| || ||||| || | || |||||||| |||| | ||||| |||||| Sbjct 61348 CAACTGTTTGCCAGCAAAGATAAGACGCTGCTGGTCAGGAGGAATGCCTTCCTTATCTTG 61289 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091 |||||| || || | ||| || |||| | || || || | || ||||| || Sbjct 61288 AATTTTAGCCTTTACATTCTCAATGGTGTCTGAAGCTTCGACTTCCAAGGTGATTGTCTT 61229 Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||||||| ||| || ||||| || ||||| Sbjct 61228 ACCGGTTAGAGTTTTAACAAAAATCTGCAT 61199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 350554515370860