Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Parhyale_20hawaiensis_20[genbank_20GCA_5F001587735.1_202016-03-11]
976,695 sequences; 4,023,757,376 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq6977 168 2e-36
seq4196 143 6e-29
seq23011 123 6e-23
seq79008 87.8 4e-12
>seq6977
Length=186913
Score = 168 bits (186), Expect = 2e-36
Identities = 168/218 (77%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401
||||| || || ||||| | || ||||| ||||||||||| || ||||| ||||| | |
Sbjct 61644 AGCCTGAGGACAAGATGGAGGGTGGATTCCTTCTGAATATTGTAATCAGACAGAGTGCGA 61585
Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461
|||||||| | ||| || || |||||||| || | ||| || || ||||| ||||||||
Sbjct 61584 CCGTCTTCCAATTGCTTGCCGGCAAAAATAAGACGCTGCTGGTCGGGAGGGATTCCTTCC 61525
Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521
|| ||||| |||||||| || |||||||| | ||| || || ||||| || || |||
Sbjct 61524 TTGTCCTGGATCTTTGCCTTCACATTTTCAATGGTGTCCGAAGCCTCTACTTCCAGGGTA 61465
Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|||||||| || || || || || || || || |||||
Sbjct 61464 ATAGTCTTGCCGGTGAGGGTCTTAACGAAAATTTGCAT 61427
Score = 163 bits (180), Expect = 6e-35
Identities = 169/219 (77%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401
||||| || || ||||| | ||||||||||| |||||||||||||| |||||||| |
Sbjct 62529 AGCCTGAGGACAAGATGGAGGGTAGATTCTTTTTGAATATTATAGTCCGATAGAGTGCGG 62470
Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461
|||||||| | || || || || ||||| || | ||||| || || || || |||||
Sbjct 62469 CCGTCTTCCAACTGCTTACCGGCGAAAATAAGACGTTGTTGGTCGGGGGGAATGCCTTCC 62410
Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGG-TTCTACCTCTAGTGT 104520
|| ||||||||||||||||| || ||||| | |||||| | ||| ||| || || || ||
Sbjct 62409 TTGTCCTGAATCTTTGCTTTGACGTTTTCGATGGTATC-CGAGGCTTCGACTTCGAGGGT 62351
Query 104521 AATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| ||||| ||||| || || || || || || |||||
Sbjct 62350 GATGGTCTTGCCAGTGAGGGTCTTGACGAAAATTTGCAT 62312
Score = 145 bits (160), Expect = 2e-29
Identities = 163/218 (75%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401
|||||||| || ||||| | |||||||||||||| ||||| || ||||| || || |
Sbjct 60960 AGCCTAAGCACAAGATGGAGGGTAGATTCTTTCTGGATATTGTAATCAGAGAGGGTACGT 60901
Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461
||||| || ||||| || |||||||| || || | ||| || || || || || |||||
Sbjct 60900 CCGTCCTCCAGTTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCGGGGGGAATGCCTTCC 60841
Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521
|| ||||| ||||| || || || || || | ||| || | ||| || || || ||
Sbjct 60840 TTGTCCTGGATCTTAGCCTTCACGTTCTCAATGGTGTCAGAGGCTTCAACTTCGAGCGTG 60781
Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| ||||| ||||| || ||||| || || ||||||||
Sbjct 60780 ATGGTCTTGCCAGTTAGGGTTTTCACGAAGATCTGCAT 60743
Score = 145 bits (160), Expect = 2e-29
Identities = 165/219 (75%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401
|||||||| || ||||| | || ||||||||||| ||||| || ||||| || || |
Sbjct 62985 AGCCTAAGCACAAGATGGAGGGTCGATTCTTTCTGGATATTGTAATCAGAGAGGGTGCGG 62926
Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461
|| ||||| || ||||| |||||||| || || | ||| || || || || || |||||
Sbjct 62925 CCATCTTCCAGCTGTTTGCCAGCAAAGATGAGACGCTGCTGGTCGGGGGGAATGCCTTCC 62866
Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGG-TTCTACCTCTAGTGT 104520
|| ||||| ||||| || || || || || | ||| || | ||| ||| || || || ||
Sbjct 62865 TTGTCCTGGATCTTAGCCTTCACGTTCTCAATGGTGTC-CGAGGCTTCGACTTCGAGGGT 62807
Query 104521 AATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| ||||| ||||| || ||||| || || ||||||||
Sbjct 62806 GATGGTCTTGCCAGTCAGGGTTTTAACGAAAATCTGCAT 62768
Score = 143 bits (158), Expect = 6e-29
Identities = 150/197 (76%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || || || ||||| ||||| || | ||| | ||| ||||| || || || ||
Sbjct 62736 GTGGACTCCTTTTGGATATTGTAGTCTGACAAAGTACGACCATCTTCAAGCTGCTTGCCG 62677
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| || || || | ||| ||||| || || || ||||| |||||||| |||||||| |||
Sbjct 62676 GCGAAGATAAGACGCTGCTGATCGGGGGGAATACCTTCCTTATCCTGGATCTTTGCCTTT 62617
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
|||||||||| ||| || || ||| || || || || || ||||| ||||| ||||||
Sbjct 62616 ACATTTTCTATGGTGTCTGAAGCTTCGACTTCGAGGGTGATGGTCTTGCCAGTGAGTGTT 62557
Query 104543 TTTACAAATATCTGCAT 104559
||||| || || |||||
Sbjct 62556 TTTACGAAGATTTGCAT 62540
Score = 127 bits (140), Expect = 5e-24
Identities = 159/218 (73%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401
|| || || || ||||| | || ||||||||||| ||||| ||||| || || || |
Sbjct 61188 AGTCTGAGCACGAGATGAAGGGTGGATTCTTTCTGGATATTGTAGTCCGAAAGTGTGCGG 61129
Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461
|| ||||| || || || || || ||||| || | |||||| || || || || |||||
Sbjct 61128 CCATCTTCCAGCTGCTTGCCGGCGAAAATAAGACGCTGTTGGTCGGGGGGAATACCTTCC 61069
Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521
|||||||| ||||| || || |||||||| | ||||| | || || || || ||
Sbjct 61068 TTATCCTGGATCTTAGCCTTCACATTTTCAATAGTATCAGAGGCCTCGACTTCAAGGGTG 61009
Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| ||||| || || || || || || || ||||||||
Sbjct 61008 ATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 60971
>seq4196
Length=56364
Score = 143 bits (158), Expect = 6e-29
Identities = 129/162 (80%), Gaps = 0/162 (0%)
Strand=Plus/Minus
Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461
|| ||||| || || || ||||||||||| ||||||||||| ||||| || || || |||
Sbjct 9850 CCATCTTCAAGCTGCTTGCCAGCAAAAATAAGCCTCTGTTGGTCAGGTGGAATACCCTCT 9791
Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521
||||| ||||| || | ||| |||||||| | ||||| || || || ||||| |||
Sbjct 9790 TTATCTTGAATTTTGGATTTGACATTTTCGATAGTATCTGAAGCCTCAACTTCTAGGGTA 9731
Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563
|| |||||||| || || ||||| |||||||||||||| |||
Sbjct 9730 ATGGTCTTACCCGTGAGGGTTTTCACAAATATCTGCATGTTG 9689
>seq23011
Length=82770
Score = 123 bits (136), Expect = 6e-23
Identities = 124/161 (77%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 104399 CTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCT 104458
|| || ||||| || || ||||| ||||| || || | |||||||||||| || || |||
Sbjct 77562 CTGCCATCTTCGAGCTGCTTTCCTGCAAAGATAAGTCGCTGTTGATCAGGGGGAATACCT 77621
Query 104459 TCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGT 104518
|| || || || ||||| ||||| |||||||| | |||||| || || ||||| ||
Sbjct 77622 TCCTTGTCTTGGATCTTGGCTTTCACATTTTCAATGGTATCAGAAGCCTCCACCTCAAGG 77681
Query 104519 GTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| || ||||| || || |||||||| || || ||||||||
Sbjct 77682 GTGATGGTCTTCCCCGTGAGTGTTTTCACGAAGATCTGCAT 77722
>seq79008
Length=3354
Score = 87.8 bits (96), Expect = 4e-12
Identities = 80/101 (79%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 104399 CTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCT 104458
|| || ||||| || || ||||| ||||| || || | |||||||||||| || || |||
Sbjct 3245 CTGCCATCTTCGAGCTGCTTTCCTGCAAAGATAAGTCGCTGTTGATCAGGGGGAATACCT 3304
Query 104459 TCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATC 104499
|| || || || ||||| ||||| |||||||| | ||||||
Sbjct 3305 TCCTTGTCTTGGATCTTGGCTTTCACATTTTCAATGGTATC 3345
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1136989910165060
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |