Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parhyale_20hawaiensis_20[genbank_20GCA_5F001587735.1_202016-03-11] 976,695 sequences; 4,023,757,376 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq6977 168 2e-36 seq4196 143 6e-29 seq23011 123 6e-23 seq79008 87.8 4e-12 >seq6977 Length=186913 Score = 168 bits (186), Expect = 2e-36 Identities = 168/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 ||||| || || ||||| | || ||||| ||||||||||| || ||||| ||||| | | Sbjct 61644 AGCCTGAGGACAAGATGGAGGGTGGATTCCTTCTGAATATTGTAATCAGACAGAGTGCGA 61585 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 |||||||| | ||| || || |||||||| || | ||| || || ||||| |||||||| Sbjct 61584 CCGTCTTCCAATTGCTTGCCGGCAAAAATAAGACGCTGCTGGTCGGGAGGGATTCCTTCC 61525 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 || ||||| |||||||| || |||||||| | ||| || || ||||| || || ||| Sbjct 61524 TTGTCCTGGATCTTTGCCTTCACATTTTCAATGGTGTCCGAAGCCTCTACTTCCAGGGTA 61465 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||||| || || || || || || || || ||||| Sbjct 61464 ATAGTCTTGCCGGTGAGGGTCTTAACGAAAATTTGCAT 61427 Score = 163 bits (180), Expect = 6e-35 Identities = 169/219 (77%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 ||||| || || ||||| | ||||||||||| |||||||||||||| |||||||| | Sbjct 62529 AGCCTGAGGACAAGATGGAGGGTAGATTCTTTTTGAATATTATAGTCCGATAGAGTGCGG 62470 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 |||||||| | || || || || ||||| || | ||||| || || || || ||||| Sbjct 62469 CCGTCTTCCAACTGCTTACCGGCGAAAATAAGACGTTGTTGGTCGGGGGGAATGCCTTCC 62410 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGG-TTCTACCTCTAGTGT 104520 || ||||||||||||||||| || ||||| | |||||| | ||| ||| || || || || Sbjct 62409 TTGTCCTGAATCTTTGCTTTGACGTTTTCGATGGTATC-CGAGGCTTCGACTTCGAGGGT 62351 Query 104521 AATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| ||||| || || || || || || ||||| Sbjct 62350 GATGGTCTTGCCAGTGAGGGTCTTGACGAAAATTTGCAT 62312 Score = 145 bits (160), Expect = 2e-29 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 |||||||| || ||||| | |||||||||||||| ||||| || ||||| || || | Sbjct 60960 AGCCTAAGCACAAGATGGAGGGTAGATTCTTTCTGGATATTGTAATCAGAGAGGGTACGT 60901 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 ||||| || ||||| || |||||||| || || | ||| || || || || || ||||| Sbjct 60900 CCGTCCTCCAGTTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCGGGGGGAATGCCTTCC 60841 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 || ||||| ||||| || || || || || | ||| || | ||| || || || || Sbjct 60840 TTGTCCTGGATCTTAGCCTTCACGTTCTCAATGGTGTCAGAGGCTTCAACTTCGAGCGTG 60781 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| ||||| || ||||| || || |||||||| Sbjct 60780 ATGGTCTTGCCAGTTAGGGTTTTCACGAAGATCTGCAT 60743 Score = 145 bits (160), Expect = 2e-29 Identities = 165/219 (75%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 |||||||| || ||||| | || ||||||||||| ||||| || ||||| || || | Sbjct 62985 AGCCTAAGCACAAGATGGAGGGTCGATTCTTTCTGGATATTGTAATCAGAGAGGGTGCGG 62926 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || ||||| || ||||| |||||||| || || | ||| || || || || || ||||| Sbjct 62925 CCATCTTCCAGCTGTTTGCCAGCAAAGATGAGACGCTGCTGGTCGGGGGGAATGCCTTCC 62866 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGG-TTCTACCTCTAGTGT 104520 || ||||| ||||| || || || || || | ||| || | ||| ||| || || || || Sbjct 62865 TTGTCCTGGATCTTAGCCTTCACGTTCTCAATGGTGTC-CGAGGCTTCGACTTCGAGGGT 62807 Query 104521 AATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| ||||| || ||||| || || |||||||| Sbjct 62806 GATGGTCTTGCCAGTCAGGGTTTTAACGAAAATCTGCAT 62768 Score = 143 bits (158), Expect = 6e-29 Identities = 150/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || || || ||||| ||||| || | ||| | ||| ||||| || || || || Sbjct 62736 GTGGACTCCTTTTGGATATTGTAGTCTGACAAAGTACGACCATCTTCAAGCTGCTTGCCG 62677 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| ||||| || || || ||||| |||||||| |||||||| ||| Sbjct 62676 GCGAAGATAAGACGCTGCTGATCGGGGGGAATACCTTCCTTATCCTGGATCTTTGCCTTT 62617 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||||| ||| || || ||| || || || || || ||||| ||||| |||||| Sbjct 62616 ACATTTTCTATGGTGTCTGAAGCTTCGACTTCGAGGGTGATGGTCTTGCCAGTGAGTGTT 62557 Query 104543 TTTACAAATATCTGCAT 104559 ||||| || || ||||| Sbjct 62556 TTTACGAAGATTTGCAT 62540 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 || || || || ||||| | || ||||||||||| ||||| ||||| || || || | Sbjct 61188 AGTCTGAGCACGAGATGAAGGGTGGATTCTTTCTGGATATTGTAGTCCGAAAGTGTGCGG 61129 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || ||||| || || || || || ||||| || | |||||| || || || || ||||| Sbjct 61128 CCATCTTCCAGCTGCTTGCCGGCGAAAATAAGACGCTGTTGGTCGGGGGGAATACCTTCC 61069 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 |||||||| ||||| || || |||||||| | ||||| | || || || || || Sbjct 61068 TTATCCTGGATCTTAGCCTTCACATTTTCAATAGTATCAGAGGCCTCGACTTCAAGGGTG 61009 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| || || || || || || || |||||||| Sbjct 61008 ATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 60971 >seq4196 Length=56364 Score = 143 bits (158), Expect = 6e-29 Identities = 129/162 (80%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || ||||| || || || ||||||||||| ||||||||||| ||||| || || || ||| Sbjct 9850 CCATCTTCAAGCTGCTTGCCAGCAAAAATAAGCCTCTGTTGGTCAGGTGGAATACCCTCT 9791 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 ||||| ||||| || | ||| |||||||| | ||||| || || || ||||| ||| Sbjct 9790 TTATCTTGAATTTTGGATTTGACATTTTCGATAGTATCTGAAGCCTCAACTTCTAGGGTA 9731 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || |||||||| || || ||||| |||||||||||||| ||| Sbjct 9730 ATGGTCTTACCCGTGAGGGTTTTCACAAATATCTGCATGTTG 9689 >seq23011 Length=82770 Score = 123 bits (136), Expect = 6e-23 Identities = 124/161 (77%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 104399 CTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCT 104458 || || ||||| || || ||||| ||||| || || | |||||||||||| || || ||| Sbjct 77562 CTGCCATCTTCGAGCTGCTTTCCTGCAAAGATAAGTCGCTGTTGATCAGGGGGAATACCT 77621 Query 104459 TCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGT 104518 || || || || ||||| ||||| |||||||| | |||||| || || ||||| || Sbjct 77622 TCCTTGTCTTGGATCTTGGCTTTCACATTTTCAATGGTATCAGAAGCCTCCACCTCAAGG 77681 Query 104519 GTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || ||||| || || |||||||| || || |||||||| Sbjct 77682 GTGATGGTCTTCCCCGTGAGTGTTTTCACGAAGATCTGCAT 77722 >seq79008 Length=3354 Score = 87.8 bits (96), Expect = 4e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 104399 CTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCT 104458 || || ||||| || || ||||| ||||| || || | |||||||||||| || || ||| Sbjct 3245 CTGCCATCTTCGAGCTGCTTTCCTGCAAAGATAAGTCGCTGTTGATCAGGGGGAATACCT 3304 Query 104459 TCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATC 104499 || || || || ||||| ||||| |||||||| | |||||| Sbjct 3305 TCCTTGTCTTGGATCTTGGCTTTCACATTTTCAATGGTATC 3345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1136989910165060