Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parhyale_20hawaiensis_20[genbank_20GCA_5F001587735.1_202016-03-11] 976,695 sequences; 4,023,757,376 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq102941 87.8 9e-13 seq17529 84.2 1e-11 seq379 82.4 4e-11 >seq102941 Length=1505 Score = 87.8 bits (96), Expect = 9e-13 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| |||| |||||||||||||||||||||||| |||||||||||||| || Sbjct 1023 GGATCGAACCCACGACATTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAACCGG 964 Query 11528 CC 11529 || Sbjct 963 CC 962 >seq17529 Length=63093 Score = 84.2 bits (92), Expect = 1e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| |||| |||||||||| ||||||||||||| |||||||||||||| || Sbjct 49051 GGATCGAACCCACGACATTCGCGTTATCAGCACGACGCTCTAACCAACTGAGCTAACCGG 49110 Query 11528 CCG 11530 ||| Sbjct 49111 CCG 49113 >seq379 Length=384185 Score = 82.4 bits (90), Expect = 4e-11 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||| |||||||||| |||| | ||||||||||||||| |||||| |||||| Sbjct 64676 TGGCCCATATGGGGATCGAACCCACGACATCCGCGTTATTAGCACGGCGCTCTAACCAAC 64617 Query 11516 TGAGCTAATGGGCC 11529 |||||||| |||| Sbjct 64616 TGAGCTAACAGGCC 64603 Score = 82.4 bits (90), Expect = 4e-11 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||| |||||||||| |||| | ||||||||||||||| |||||| |||||| Sbjct 67917 TGGCCCATATGGGGATCGAACCCACGACATCCGCGTTATTAGCACGGCGCTCTAACCAAC 67858 Query 11516 TGAGCTAATGGGCC 11529 |||||||| |||| Sbjct 67857 TGAGCTAACAGGCC 67844 Lambda K H 0.640 0.410 0.923 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 258378547263820