Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parhyale_20hawaiensis_20[genbank_20GCA_5F001587735.1_202016-03-11] 976,695 sequences; 4,023,757,376 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq6977 149 5e-31 seq4196 104 2e-17 seq15119 82.4 7e-11 >seq6977 Length=186913 Score = 149 bits (164), Expect = 5e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| | ||||| || | || || | ||||| ||| | || Sbjct 61427 ATGCAAATTTTCGTTAAGACCCTCACCGGCAAGACTATTACCCTGGAAGTAGAGGCTTCG 61486 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || ||||| ||| ||| ||||| ||||| || || || ||||| Sbjct 61487 GACACCATTGAAAATGTGAAGGCAAAGATCCAGGACAAGGAAGGAATCCCTCCCGACCAG 61546 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| |||||||||||||||| ||||| ||||| | ||||||| || ||||||||| Sbjct 61547 CAGCGTCTTATTTTTGCCGGCAAGCAATTGGAAGACGGTCGCACTCTGTCTGATTACAAT 61606 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||| || |||||||| || ||| | || || ||||| | ||||| Sbjct 61607 ATTCAGAAGGAATCCACCCTCCATCTTGTCCTCAGGCTTCGTGGAGG 61653 Score = 134 bits (148), Expect = 1e-26 Identities = 159/213 (75%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || ||| | |||||||| | ||||| | ||||| || | || Sbjct 61199 ATGCAGATTTTTGTTAAAACTCTAACCGGTAAGACAATCACCTTGGAAGTCGAAGCTTCA 61258 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || ||| | ||| | |||| ||| || || ||||| ||||| |||||||| Sbjct 61259 GACACCATTGAGAATGTAAAGGCTAAAATTCAA-GATAAGGAAGGCATTCCTCCTGACCA 61317 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| |||| ||||| |||||||| || ||||| | ||| || || || ||||| Sbjct 61318 GCAGCGTCTTATCTTTGCTGGCAAACAGTTGGAAGACGGTCGTACCCTGTCTGACTACAA 61377 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||||||| |||||||| || || || ||||| Sbjct 61378 TATTCAAAAGGAATCCACTCTTCACTTGGTGCT 61410 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| | ||||| || | ||||| | ||||| ||| | || Sbjct 61655 ATGCAAATTTTCGTGAAGACCCTCACCGGAAAGACAATCACCCTGGAAGTCGAGGCTTCG 61714 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || ||||| ||| ||| || || ||||| ||||| || |||||| Sbjct 61715 GACACCATTGAAAACGTGAAGGCAAAGATCCAGGATAAGGAAGGTATTCCCCCCGACCAA 61774 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| |||| || |||||||| || | ||||||| ||| ||| || || |||||| Sbjct 61775 CAGCGTCTTATCTTCGCCGGCAAGCAGCTTGAAGATGGTCGTACTTTGTCAGACTACAAT 61834 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || ||||| || ||||| || || || ||||| | || ||||||| Sbjct 61835 ATCCAAAAGGAGTCCACCCTGCACTTGGTGCTGCGTCTGCGAGGAGG 61881 Score = 129 bits (142), Expect = 5e-25 Identities = 163/222 (73%), Gaps = 8/222 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| | || || || ||||||| ||||||| || | || Sbjct 62312 ATGCAAATTTTCGTCAAGACCCTCACTGGCAAGACCATCACCCTCGAAGTCGAAGCCTCG 62371 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || || ||||| |||| ||||||| | ||| ||||| ||||| ||||| || || Sbjct 62372 GATACCATCGAAAACGTCA---AAGCAAAGATTCAG-GACAAGGAAGGCATTCCCCCCGA 62427 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 |||||| || ||||||| ||||| || || || ||||| | |||||| | || || Sbjct 62428 CCAACAACGTCTTATTTTCGCCGGTAAGCAGTTGGAAGACGGCCGCACTCTATCGGACTA 62487 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 ||||||||||||||||| || || ||| | || || ||||| Sbjct 62488 TAATATTCAAAAAGAATCTACCCTCCATCTTGTCCTCAGGCT 62529 Score = 127 bits (140), Expect = 2e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | ||||| || ||||||| | ||||| ||| | ||| Sbjct 60971 ATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTTGAAGTCGAGGCCTCT 61030 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || ||||| || ||||| || ||| || || ||||| ||||| || |||||| Sbjct 61031 GATACTATTGAAAATGTGAAGGCTAAGATCCAGGATAAGGAAGGTATTCCCCCCGACCAA 61090 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| ||||||| |||||||| || | ||||||| ||||| | || |||||| Sbjct 61091 CAGCGTCTTATTTTCGCCGGCAAGCAGCTGGAAGATGGCCGCACACTTTCGGACTACAAT 61150 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 || || ||||||||||| || ||| | ||||| || || Sbjct 61151 ATCCAGAAAGAATCCACCCTTCATCTCGTGCTCAGACT 61188 Score = 123 bits (136), Expect = 2e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || |||| || || ||||||| ||||||| || | || Sbjct 62768 ATGCAGATTTTCGTTAAAACCCTGACTGGCAAGACCATCACCCTCGAAGTCGAAGCCTCG 62827 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| ||||| || ||| ||||| ||||| ||||| || ||||| Sbjct 62828 GACACCATTGAGAACGTGAAGGCTAAGATCCAGGACAAGGAAGGCATTCCCCCCGACCAG 62887 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||| |||||||| | ||||||| ||||| | ||||||||| Sbjct 62888 CAGCGTCTCATCTTTGCTGGCAAACAGCTGGAAGATGGCCGCACCCTCTCTGATTACAAT 62947 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 || || |||||||| || || ||| | ||||| ||||| Sbjct 62948 ATCCAGAAAGAATCGACCCTCCATCTTGTGCTTAGGCT 62985 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || ||||||| || | || || | |||||||| | || Sbjct 62084 ATGCAGATTTTCGTGAAAACCCTGACCGGCAAGACGATTACTCTTGAAGTGGAAGCCTCG 62143 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || ||| ||||| | |||| ||| ||||||||||| ||||| || ||||| Sbjct 62144 GATACGATTGAGAATGTGAAGGCTAAAATTCAG-GACAAAGAAGGCATTCCCCCCGACCA 62202 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||||| | || || ||||| || || | ||||| | ||||| || || ||||| Sbjct 62203 ACAGCGTCTGATCTTCGCCGGTAAGCAGCTTGAAGACGGCCGCACCTTGTCAGACTACAA 62262 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||||||||||| || || || || |||||| | | ||||| || Sbjct 62263 CATTCAAAAAGAATCGACCCTTCACTTGGTGCTACGTTTGAGAGGTGG 62310 Score = 109 bits (120), Expect = 5e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || | || || || ||||||| ||||||| || | ||| Sbjct 60743 ATGCAGATCTTCGTGAAAACCCTAACTGGCAAGACCATCACGCTCGAAGTTGAAGCCTCT 60802 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| ||||| || ||| ||||| ||||| ||||| || ||||| Sbjct 60803 GACACCATTGAGAACGTGAAGGCTAAGATCCAGGACAAGGAAGGCATTCCCCCCGACCAG 60862 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||| ||||| ||| | || || | || || | ||||||||| Sbjct 60863 CAGCGTCTCATCTTTGCTGGCAAGCAACTGGAGGACGGACGTACCCTCTCTGATTACAAT 60922 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 || || |||||||| || || ||| | ||||| ||||| Sbjct 60923 ATCCAGAAAGAATCTACCCTCCATCTTGTGCTTAGGCT 60960 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | ||||| ||| | ||||| | || || ||| | || Sbjct 62996 ATGCAGATCTTCGTGAAGACCCTCACCGGCAAAACAATCACCCTTGAGGTCGAGGCCTCG 63055 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || ||||| || ||||| ||| ||| || || ||||| ||||| || ||||| Sbjct 63056 GATACTATTGAAAATGTGAAGGCAAAGATCCAGGATAAGGAAGGTATTCCCCCCGACCAG 63115 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || |||||||||||||| | ||||||| ||||| | || |||||| Sbjct 63116 CAGCGTCTCATCTTTGCCGGCAAACAGCTGGAAGATGGCCGCACCCTTTCTGACTACAAT 63175 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || ||||| || ||||| || || Sbjct 63176 ATCCAGAAGGAGTCCACTCTCCATTTGGTTCT 63207 Score = 84.2 bits (92), Expect = 2e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 25056 TCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || ||||| || ||| ||||| || ||| ||||| ||||| ||||| || ||| Sbjct 61913 TCGGACACCATTGAGAACGTGAAGGCTAAGATCCAGGACAAGGAAGGCATTCCCCCCGAC 61972 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| | || ||||| |||||||| | ||||||| ||| || | |||||| Sbjct 61973 CAGCAGCGTCTCATCTTTGCTGGCAAACAGCTGGAAGATGGTCGTACCCTCTCTGATTAC 62032 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 ||||| ||||| || || || || || | ||||| || || Sbjct 62033 AATATCCAAAAGGAGTCTACTCTCCACCTTGTGCTCAGACT 62073 >seq4196 Length=56364 Score = 104 bits (114), Expect = 2e-17 Identities = 121/161 (75%), Gaps = 8/161 (5%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| |||||||| || || | || ||||| |||| || | ||||| ||| | || Sbjct 9693 ATGCAGATATTTGTGAAAACCCTCACGGGTAAGACCATTACCCTAGAAGTTGAGGCTTCA 9752 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || |||||||| |||| || | |||| ||| || ||||| || ||||||||||| Sbjct 9753 GATACTATCGAAAATGTCA---AATCCAAAATTCAA-GATAAAGAGGGTATTCCACCTGA 9808 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATG 25155 ||||||| || |||||||||| ||||| || | ||||||| Sbjct 9809 CCAACAGAGGCTTATTTTTGCTGGCAAGCAGCTTGAAGATG 9849 >seq15119 Length=58442 Score = 82.4 bits (90), Expect = 7e-11 Identities = 109/149 (73%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 51102 GTTAGGATCGCGACCATCCACGCTGTAATGATCGTTTAGAAATATGGCATAACCCAATGC 51161 ||| || || |||||||||| ||| ||||| || | ||||| || ||| || Sbjct 57160 GTTGGGGTCACGACCATCCAGCGAGTACCTGTCGTTGAGGTAAATGGCGTACGCCAGGGC 57219 Query 51162 CATGTCTGCACTAGGCGTCCATTCCATAATTTTCTTGGCCCAGTACATGCGCATGTAACC 51221 |||| | | || |||||||| | |||||||| |||||||||||||||| | | || Sbjct 57220 GGTGTCGGGATCTGGGGTCCATTCTAGTATTTTCTTAGCCCAGTACATGCGCAAGAAGCC 57279 Query 51222 GTGCATCTTGCCCTC-GCAACGAAGCTGC 51249 |||||| || ||||| | |||| |||||| Sbjct 57280 GTGCATTTTACCCTCAGTAACG-AGCTGC 57307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428169893016425