Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parhyale_20hawaiensis_20[genbank_20GCA_5F001587735.1_202016-03-11] 976,695 sequences; 4,023,757,376 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq6977 104 2e-17 seq4196 87.8 1e-12 >seq6977 Length=186913 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| ||||||| |||| || || || || ||| ||||| ||||| || Sbjct 61199 ATGCAGATTTTTGTTAAAACTCTAACCGGTAAGACAATCACCTTGGAAGTCGAAGCTTCA 61258 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | ||| |||||| ||||| || || | ||| |||| Sbjct 61259 GACACCATTGAGAATGTAAAGGCTAAAATTCAAGATAAGGAAGGCATTCCTCCTGACCAG 61318 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||| | |||||||||||||||||||| | ||||| || || | || |||||| Sbjct 61319 CAGCGTCTTATCTTTGCTGGCAAACAGTTGGAAGACGGTCGTACCCTGTCTGACTACAAT 61378 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||| |||||||| |||||||| |||| | ||| | ||||| || Sbjct 61379 ATTCAAAAGGAATCCACTCTTCACTTGGTGCTGCGTCTTCGAGGCGG 61425 >seq4196 Length=56364 Score = 87.8 bits (96), Expect = 1e-12 Identities = 118/163 (72%), Gaps = 6/163 (4%) Strand=Plus/Plus Query 21830 CAAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGC 21889 ||| ||||| |||||| | ||||| | ||||| || ||||||||| | ||| || || Sbjct 9689 CAACATGCAGATATTTGTGAAAACCCTCACGGGTAAGACCATTACCCTAGAAGTTGAGGC 9748 Query 21890 CGCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGT---ACCTGT 21946 |||| || | | || | || |||||| |||||||||||| | ||||| Sbjct 9749 TTCAGATACTATCGAAAATGTCAAATCCAAAATTCAAGATAAAGAGGGTATTCCACCTG- 9807 Query 21947 AAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGAT 21989 |||||||||| ||||| ||||||||||| || || |||||| Sbjct 9808 --ACCAACAGAGGCTTATTTTTGCTGGCAAGCAGCTTGAAGAT 9848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 353861872075030