Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parhyale_20hawaiensis_20[genbank_20GCA_5F001587735.1_202016-03-11] 976,695 sequences; 4,023,757,376 total letters Query= NC_008953.1 Length=3935 Score E Sequences producing significant alignments: (Bits) Value seq2748 109 1e-20 seq8181 107 5e-20 seq655469 84.2 5e-13 seq54304 84.2 5e-13 >seq2748 Length=310546 Score = 109 bits (120), Expect = 1e-20 Identities = 104/133 (78%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 3366 ATGTACTTTTCACAAATACGGTCCTTCGGGCTCCCTGGAAAACTACGAGGGACTCTGCAT 3425 ||| || || |||||||||||| | || |||||| | || | | |||| || |||||| | Sbjct 33650 ATGCACCTTCCACAAATACGGTACCTCCGGCTCCATTGAGACCCACGACGGTCTCTGCGT 33709 Query 3426 CCTCCCGGAGAACGTGGTCAACGAGAAGATCTACATTTTCCTCTGGTTCTGGTTCTACGT 3485 || ||| ||| | ||||||||||||||||||| |||||||||||||||||| | | Sbjct 33710 GCTGCCGCTCAACATCTTCAACGAGAAGATCTACATCTTCCTCTGGTTCTGGTTCATCAT 33769 Query 3486 GCTAGCCATCATC 3498 | ||||||||| Sbjct 33770 TGTTGCCATCATC 33782 >seq8181 Length=103125 Score = 107 bits (118), Expect = 5e-20 Identities = 92/114 (81%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 3366 ATGTACTTTTCACAAATACGGTCCTTCGGGCTCCCTGGAAAACTACGAGGGACTCTGCAT 3425 ||| || || |||||||||||| | || |||||| | |||| | |||| || |||||| | Sbjct 27065 ATGCACCTTCCACAAATACGGTACCTCCGGCTCCATTGAAACCCACGACGGTCTCTGCGT 27124 Query 3426 CCTCCCGGAGAACGTGGTCAACGAGAAGATCTACATTTTCCTCTGGTTCTGGTT 3479 || ||| ||| | ||||||||||||||||||| ||||||||||||||||| Sbjct 27125 GCTGCCGCTCAACATCTTCAACGAGAAGATCTACATCTTCCTCTGGTTCTGGTT 27178 >seq655469 Length=356 Score = 84.2 bits (92), Expect = 5e-13 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 3367 TGTACTTTTCACAAATACGGTCCTTCGGGCTCCCTGGAAAACTACGAGGGACTCTGCATC 3426 || || || ||||| || ||| |||| ||||| | || | |||| || |||||| | Sbjct 261 TGCACCTTCCACAAGTATGGTGCTTCCGGCTCTATCGAGAGTCACGACGGTCTCTGCGTG 202 Query 3427 CTCCCGGAGAACGTGGTCAACGAGAAGATCTACATTTTCCTCTGGTTCTGGTTC 3480 || || ||| | ||||||||||||||||||| |||||||||||||||||| Sbjct 201 CTGCCACTCAACATCTTCAACGAGAAGATCTACATCTTCCTCTGGTTCTGGTTC 148 >seq54304 Length=27226 Score = 84.2 bits (92), Expect = 5e-13 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 3367 TGTACTTTTCACAAATACGGTCCTTCGGGCTCCCTGGAAAACTACGAGGGACTCTGCATC 3426 || || || ||||| || ||| |||| ||||| | || | |||| || |||||| | Sbjct 3086 TGCACCTTCCACAAGTATGGTGCTTCCGGCTCTATCGAGAGTCACGACGGTCTCTGCGTG 3145 Query 3427 CTCCCGGAGAACGTGGTCAACGAGAAGATCTACATTTTCCTCTGGTTCTGGTTC 3480 || || ||| | ||||||||||||||||||| |||||||||||||||||| Sbjct 3146 CTGCCACTCAACATCTTCAACGAGAAGATCTACATCTTCCTCTGGTTCTGGTTC 3199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 12346681132500