Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parhyale_20hawaiensis_20[genbank_20GCA_5F001587735.1_202016-03-11] 976,695 sequences; 4,023,757,376 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq7011 129 1e-24 seq3070 91.5 3e-13 >seq7011 Length=120798 Score = 129 bits (142), Expect = 1e-24 Identities = 128/166 (77%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 42501 GAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTAC 42560 || || |||||||||||||| |||||||| ||||| |||||| | ||||| ||| ||||| Sbjct 25621 GAAGCACGCTGCTTCTACGGGTTCCAGATCGCCATGGAGAACATTCACTCCGAGATGTAC 25680 Query 42561 GCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCC 42620 ||| ||||||| ||| || || ||| ||||| | | || ||||| ||| Sbjct 25681 AGTCTGCTGATCAACACCTACGTCTCCGACACCGCCGAGCAGACGAGACTCTTCAACGCC 25740 Query 42621 ATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCA 42666 || ||||| |||||||| || ||||||||||| |||||||| |||| Sbjct 25741 ATCGAGACCATGCCCTGTATTAAGAAGAAGGCAGACTGGGCCCTCA 25786 Score = 123 bits (136), Expect = 5e-23 Identities = 115/146 (79%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 42711 GCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTC 42770 |||||| |||| || ||||| ||||| ||||| || |||||||||||||||||||||| Sbjct 26910 GCCTTTGCCGCAGTTGAGGGAATCTTTTTCTCCGGGTCCTTCGCCTCCATCTTCTGGCTG 26969 Query 42771 AAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAG 42830 ||| || | ||||||||| || |||||| ||||| || ||| | |||||||| Sbjct 26970 AAGAAGCGCGGCCTGATGCCCGGCCTGACCTTCAGCAACGAGCTTATCTCCCGGGACGAG 27029 Query 42831 GGGCTGCATAGGGACTTTGCCTGCCT 42856 ||||| || | |||||||||||||| Sbjct 27030 GGGCTCCACACCGACTTTGCCTGCCT 27055 Score = 96.9 bits (106), Expect = 6e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 42908 CATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTC 42967 |||| ||| || || || |||||||| |||||||||| || || |||| || ||| | Sbjct 28386 CATCGTCAGAGAAGCTGTAAAGATCGAGCAGGAGTTCCTGACAGAGGCGCTTCCGGTGGC 28445 Query 42968 CCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCT 43027 || ||||||||||| |||||||||| |||||||| ||| || ||||||||||| Sbjct 28446 GCTTATCGGCATGAACTGCGACCTCATGAAGCAGTACATCGAGTTTGTGGCCGACCATCT 28505 Query 43028 CCT 43030 ||| Sbjct 28506 CCT 28508 >seq3070 Length=111036 Score = 91.5 bits (100), Expect = 3e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 244475 ATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAG 244534 |||||| | || |||||||||||||| || || || || |||||||| ||| ||||||| Sbjct 90904 ATGAAGGCATCCGCCAGTCCCTGCACTCCAATCCCAATAGGTCTGTGGCGCATGTTGGAC 90845 Query 244535 CGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTT 244587 || || || |||||||||||| | || ||||||| | |||||||| || Sbjct 90844 CGACGCGCCTCAGGCACGGGGTAATAATTCACGTCGATGATTTTGTTGAGATT 90792 Score = 87.8 bits (96), Expect = 3e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 244475 ATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAG 244534 |||||| | || |||||||||||||| || ||||| || |||||||| ||| |||| || Sbjct 48753 ATGAAGGCATCCGCCAGTCCCTGCACTCCAATGCCAATAGGTCTGTGGCGCATGTTCGAC 48694 Query 244535 CGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTT 244587 || || || ||||| |||||| | || ||||||| | |||||||| || Sbjct 48693 CGACGCGCCTCAGGCACAGGGTAATAATTCACGTCGATGATTTTGTTGAGATT 48641 Score = 86.0 bits (94), Expect = 1e-11 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 244723 GTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATT 244782 ||||| ||||| || ||||||||||| ||| ||||| ||||| || | ||| ||||| Sbjct 47647 GTACTCAACAATTTCTGTGCAGAGGTTGGAGCATTTGATAGTGCCTAGATTCTGTTGATT 47588 Query 244783 GGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTG 244839 | |||| ||| || ||||||||||| |||||| |||| || ||||| | ||| Sbjct 47587 GCTCTTGCGGTTACACGCGTCCTTGTACAGCATGTAGGGGGTTCCTGTCTCCACCTG 47531 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 244129 GTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCT 244188 ||||| ||||||| || | |||||||||||| |||||||||| ||||| || ||| Sbjct 50562 GTAGATGTTGCTGGTGTAGGCCTCGATGCTCTCGTTGTTGCCCAGGATCTGTGCGGTGGA 50503 Query 244189 CGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTG 244233 || || |||||||||| || |||||| ||||| | ||| || || Sbjct 50502 GGCGGTAGGCATGGGCGCCAGCAGCAGGCTGTTGCGCACACCATG 50458 Score = 86.0 bits (94), Expect = 1e-11 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 244723 GTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATT 244782 ||||| ||||| || ||||||||||| ||| ||||| ||||| || | ||| ||||| Sbjct 89569 GTACTCAACAATTTCTGTGCAGAGGTTGGAGCATTTGATAGTGCCTAGATTCTGTTGATT 89510 Query 244783 GGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTG 244839 | |||| ||| || ||||||||||| |||||| |||| || ||||| | ||| Sbjct 89509 GCTCTTGCGGTTACACGCGTCCTTGTACAGCATGTAGGGGGTTCCTGTCTCCACCTG 89453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 932810057813200