Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Parhyale_20hawaiensis_20[genbank_20GCA_5F001587735.1_202016-03-11]
976,695 sequences; 4,023,757,376 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq6977 163 7e-35
>seq6977
Length=186913
Score = 163 bits (180), Expect = 7e-35
Identities = 175/230 (76%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || ||||| || |||||||||| ||| |||||| |||||||| ||||| |
Sbjct 61197 CCACCACGCAGTCTGAGCACGAGATGAAGGGTGGATTCTTTCTGGATATTGTAGTCCGAA 61138
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| ||||| || ||||| | || || || ||||| || ||||||||||| || |||
Sbjct 61137 AGTGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAAATAAGACGCTGTTGG---TCGGGG 61081
Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
|| ||||| ||||||||||| || || ||||| ||||| |||| ||| | ||
Sbjct 61080 GGAATACCTTCCTTATCCTGGATCTTAGCCTTCACATTTTCAATAGTATCAGAGGCCTCG 61021
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||||| || ||||| ||||| ||||| || ||||| ||||| ||||||||
Sbjct 61020 ACTTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 60971
Score = 150 bits (166), Expect = 4e-31
Identities = 172/230 (75%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || || || || || ||||| | || ||||||||| ||||||||||| |
Sbjct 62538 CCACCACGAAGCCTGAGGACAAGATGGAGGGTAGATTCTTTTTGAATATTATAGTCCGAT 62479
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| ||||| |||||||| || || || || ||||| || ||||| ||||| || |||
Sbjct 62478 AGAGTGCGGCCGTCTTCCAACTGCTTACCGGCGAAAATAAGACGTTGTTGG---TCGGGG 62422
Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
|| ||||| || ||||| || || ||||| |||||||| || | ||| | |||
Sbjct 62421 GGAATGCCTTCCTTGTCCTGAATCTTTGCTTTGACGTTTTCGATGGTATCCGAGGCTTCG 62362
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|||||||| ||||| ||||| || || || ||||||||||| || |||||
Sbjct 62361 ACTTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAAATTTGCAT 62312
Score = 138 bits (152), Expect = 3e-27
Identities = 171/233 (73%), Gaps = 6/233 (3%)
Strand=Plus/Minus
Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303
|| ||||||||||||| || || | ||| | ||| || || |||||||| |||||
Sbjct 63225 TGGCCACCGCGGAGTCGCAGAACCAAATGGAGAGTGGACTCCTTCTGGATATTGTAGTCA 63166
Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363
| || ||||| || ||||| | ||||| || || ||||| |||||||| || ||
Sbjct 63165 GAAAGGGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAAGATGAGACGCTGCTGG---TCG 63109
Query 288364 GGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT 288420
||| || ||||| ||||||||||| || || ||||| ||||| |||| ||| |
Sbjct 63108 GGGGGAATACCTTCCTTATCCTGGATCTTTGCCTTCACATTTTCAATAGTATCCGAGGCC 63049
Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || || || ||||| || || ||||| || ||||| ||||| ||||||||
Sbjct 63048 TCGACCTCAAGGGTGATTGTTTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 62996
Score = 136 bits (150), Expect = 9e-27
Identities = 169/230 (73%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
|| || || || ||||| || ||||| | || |||||| |||||||| || || | |
Sbjct 60969 CCGCCACGCAGCCTAAGCACAAGATGGAGGGTAGATTCTTTCTGGATATTGTAATCAGAG 60910
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| || |||||||| || | ||| || || || ||||| |||||||| || || |||
Sbjct 60909 AGGGTACGTCCGTCCTCCAGTTGCTTGCCAGCAAAGATGAGACGCTGCTGG---TCGGGG 60853
Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
|| ||||| || |||||||| || || |||||||| || || | || | |||
Sbjct 60852 GGAATGCCTTCCTTGTCCTGGATCTTAGCCTTCACGTTCTCAATGGTGTCAGAGGCTTCA 60793
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|||||||||||||| ||||| || || || || || ||||| ||||||||
Sbjct 60792 ACTTCGAGCGTGATGGTCTTGCCAGTTAGGGTTTTCACGAAGATCTGCAT 60743
Score = 136 bits (150), Expect = 9e-27
Identities = 148/195 (76%), Gaps = 6/195 (3%)
Strand=Plus/Minus
Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341
||||||||| || || ||||| | | ||||| |||||||| | || || || |||||
Sbjct 62275 TTCTTTTTGAATGTTGTAGTCTGACAAGGTGCGGCCGTCTTCAAGCTGCTTACCGGCGAA 62216
Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398
||||||||||||||| || ||| || |||||||| ||||| ||||| || |||||
Sbjct 62215 GATCAGACGCTGTTG---GTCGGGGGGAATGCCTTCTTTGTCCTGAATTTTAGCCTTCAC 62159
Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458
|| || || | ||| | ||| ||||| || || |||||||| |||||||| || ||
Sbjct 62158 ATTCTCAATCGTATCCGAGGCTTCCACTTCAAGAGTAATCGTCTTGCCGGTCAGGGTTTT 62099
Query 288459 GACGAATATCTGCAT 288473
||||| ||||||||
Sbjct 62098 CACGAAAATCTGCAT 62084
Score = 125 bits (138), Expect = 2e-23
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
|| || || || || || || ||||| | ||| ||| || || ||||| || || |
Sbjct 61653 CCTCCACGAAGCCTGAGGACAAGATGGAGGGTGGATTCCTTCTGAATATTGTAATCAGAC 61594
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| ||||| |||||||| ||||| || || || || || |||||||| || |||
Sbjct 61593 AGAGTGCGACCGTCTTCCAATTGCTTGCCGGCAAAAATAAGACGCTGCTGGTCGGGAGGG 61534
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|||||||| || |||||||| || || ||||| ||||| || | || | ||||||
Sbjct 61533 ATTCCTTCCTTGTCCTGGATCTTTGCCTTCACATTTTCAATGGTGTCCGAAGCCTCTACT 61474
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || || || ||||| ||||| || ||||| ||||| || |||||
Sbjct 61473 TCCAGGGTAATAGTCTTGCCGGTGAGGGTCTTAACGAAAATTTGCAT 61427
Score = 122 bits (134), Expect = 2e-22
Identities = 144/194 (74%), Gaps = 6/194 (3%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| ||||||||||| ||||| | | || || || ||||| | || || || ||||||
Sbjct 61845 TCCTTTTGGATATTGTAGTCTGACAAAGTACGACCATCTTCAAGCTGCTTGCCGGCGAAG 61786
Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399
|| ||||||||||| || ||| || ||||| ||||||||||| || || ||||||
Sbjct 61785 ATAAGACGCTGTTGG---TCGGGGGGAATACCTTCCTTATCCTGGATCTTTGCCTTCACG 61729
Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459
||||| || | || | || ||||| || ||||| ||||| ||||| || |||||
Sbjct 61728 TTTTCAATGGTGTCCGAAGCCTCGACTTCCAGGGTGATTGTCTTTCCGGTGAGGGTCTTC 61669
Query 288460 ACGAATATCTGCAT 288473
||||| || |||||
Sbjct 61668 ACGAAAATTTGCAT 61655
Score = 116 bits (128), Expect = 9e-21
Identities = 143/194 (74%), Gaps = 6/194 (3%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| ||||||||||| ||||| | | || || || ||||| | || || || ||||||
Sbjct 62730 TCCTTTTGGATATTGTAGTCTGACAAAGTACGACCATCTTCAAGCTGCTTGCCGGCGAAG 62671
Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399
|| |||||||| ||| || ||| || ||||| ||||||||||| || || || ||
Sbjct 62670 ATAAGACGCTGCTGA---TCGGGGGGAATACCTTCCTTATCCTGGATCTTTGCCTTTACA 62614
Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459
|||||||| | || | ||| |||||||| ||||| ||||| || || || || ||
Sbjct 62613 TTTTCTATGGTGTCTGAAGCTTCGACTTCGAGGGTGATGGTCTTGCCAGTGAGTGTTTTT 62554
Query 288460 ACGAATATCTGCAT 288473
||||| || |||||
Sbjct 62553 ACGAAGATTTGCAT 62540
Score = 86.0 bits (94), Expect = 1e-11
Identities = 122/169 (72%), Gaps = 7/169 (4%)
Strand=Plus/Minus
Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301
|||| ||||| || ||||| || || || || | || || ||||||||||| || |
Sbjct 62086 CATG-CCACCACGCAGTCTGAGCACAAGGTGGAGAGTAGACTCCTTTTGGATATTGTAAT 62028
Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361
| | ||| || || || ||||| | ||||| || || ||||| |||||||| || |
Sbjct 62027 CAGAGAGGGTACGACCATCTTCCAGCTGTTTGCCAGCAAAGATGAGACGCTGCTG---GT 61971
Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTAT 288407
| ||| || ||||| || |||||||| || || |||||||| || ||
Sbjct 61970 CGGGGGGAATGCCTTCCTTGTCCTGGATCTTAGCCTTCACGTTCTCAAT 61922
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1164892317274210
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |