Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parhyale_20hawaiensis_20[genbank_20GCA_5F001587735.1_202016-03-11] 976,695 sequences; 4,023,757,376 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq941051 98.7 1e-15 seq66313 98.7 1e-15 seq7011 91.5 2e-13 seq64647 87.8 2e-12 seq32741 87.8 2e-12 seq3070 84.2 3e-11 >seq941051 Length=452 Score = 98.7 bits (108), Expect = 1e-15 Identities = 80/97 (82%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 172808 AGAGGGAACACACCGTAGTGATCACGACCAACCACAGAAAGACCAGCAACTGCGAGGGTC 172867 |||||||| || ||||| | ||||||||||| ||| |||||| || ||||| |||||| Sbjct 31 AGAGGGAAGACTCCGTATTTGTCACGACCAACAACACCAAGACCTGCTACTGCCAGGGTC 90 Query 172868 TTCGCGGAATCACCCTCCGTCACGATGAGCGTACACT 172904 || || || || ||||| |||| |||||||||||||| Sbjct 91 TTGGCTGAGTCTCCCTCTGTCAAGATGAGCGTACACT 127 >seq66313 Length=14204 Score = 98.7 bits (108), Expect = 1e-15 Identities = 80/97 (82%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 172808 AGAGGGAACACACCGTAGTGATCACGACCAACCACAGAAAGACCAGCAACTGCGAGGGTC 172867 |||||||| || ||||| | ||||||||||| ||| |||||| || ||||| |||||| Sbjct 13768 AGAGGGAAGACTCCGTATTTGTCACGACCAACAACACCAAGACCTGCTACTGCCAGGGTC 13827 Query 172868 TTCGCGGAATCACCCTCCGTCACGATGAGCGTACACT 172904 || || || || ||||| |||| |||||||||||||| Sbjct 13828 TTGGCTGAGTCTCCCTCAGTCAAGATGAGCGTACACT 13864 >seq7011 Length=120798 Score = 91.5 bits (100), Expect = 2e-13 Identities = 116/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 126046 GGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCC 126105 |||||| || |||||| |||||||| |||||||| || || || |||| ||| || Sbjct 27050 GGCAAAGTCGGTGTGGAGCCCCTCGTCCCGGGAGATAAGCTCGTTGCTGAAGGTCAGGCC 26991 Query 126106 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGAT 126165 ||||| || || |||||||||| |||||| || | || || || ||||| ||||| Sbjct 26990 GGGCATCAGGCCGCGCTTCTTCAGCCAGAAGATGGAGGCGAAGGACCCGGAGAAAAAGAT 26931 Query 126166 TCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAG 126205 |||||| || || || || | || ||||| ||| || Sbjct 26930 TCCCTCAACTGCGGCAAAGGCGATGATCCGCTCCGCATAG 26891 >seq64647 Length=8232 Score = 87.8 bits (96), Expect = 2e-12 Identities = 125/176 (71%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 171908 TCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACACGGTTCAAGGAGATTGATATTG 171967 ||||| || |||||||||||||| || || |||||| || | || | ||||| ||| Sbjct 8004 TCTTTTCCGCCCATGAGACGCGTACCGAACTGACCAATGGGCTGCAGAACGTTGATGTTG 7945 Query 171968 TTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGTATCCGCGAGGGAGACTTCACCG 172027 || || || | | ||| | ||||| |||||||| || | |||||| ||||||||| Sbjct 7944 TTGGAGCCAACGAAGTTCTGGGCCAGGTTGACAATAGTGGACATGAGGGACACTTCACCG 7885 Query 172028 TGATGGTAGGCCGACTTGTCCGCGACATACGCCGCCAACTGTGCCACCTTCATCTC 172083 || || ||||| | | || || | |||||| ||| ||||| |||| ||| Sbjct 7884 TGGTGATAGGCGGTGTGTTCTGCAATGCTGCCCGCCAGCTGAGCCACTTTCACCTC 7829 >seq32741 Length=53758 Score = 87.8 bits (96), Expect = 2e-12 Identities = 125/176 (71%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 171908 TCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACACGGTTCAAGGAGATTGATATTG 171967 ||||| || |||||||||||||| || || |||||| || | || | ||||| ||| Sbjct 39099 TCTTTTCCGCCCATGAGACGCGTACCGAACTGACCAATGGGCTGCAGAACGTTGATGTTG 39158 Query 171968 TTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGTATCCGCGAGGGAGACTTCACCG 172027 || || || | | ||| | ||||| |||||||| ||| | ||||| ||||||||| Sbjct 39159 TTGGAGCCAACGAAGTTCTGGGCCAGGTTGACAATAGTAGACATAAGGGACACTTCACCG 39218 Query 172028 TGATGGTAGGCCGACTTGTCCGCGACATACGCCGCCAACTGTGCCACCTTCATCTC 172083 || || ||||| | | || || | |||||| ||| ||||| |||| ||| Sbjct 39219 TGGTGATAGGCGGTGTGTTCTGCAATGCTGCCCGCCAGCTGAGCCACTTTCACCTC 39274 >seq3070 Length=111036 Score = 84.2 bits (92), Expect = 3e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 113942 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAG 114001 ||||| ||| | ||||| | ||| | || ||| ||||| |||| ||| || ||||||||| Sbjct 50561 TAGATGTTGCTGGTGTAGGCCTCGATGCTCTCGTTGTTGCCCAGGATCTGTGCGGTGGAG 50502 Query 114002 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACC 114042 || || |||||||| |||| || |||||||| || | ||| Sbjct 50501 GCGGTAGGCATGGGCGCCAGCAGCAGGCTGTTGCGCACACC 50461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590060696570600