Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parhyale_20hawaiensis_20[genbank_20GCA_5F001587735.1_202016-03-11] 976,695 sequences; 4,023,757,376 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq3070 95.1 1e-14 >seq3070 Length=111036 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/210 (71%), Gaps = 4/210 (2%) Strand=Plus/Plus Query 95002 TTTCAGTTCGACCTCTGGGGTGTGAAGCCCTCGGGTCTGTACGACTGGGAAG--CTCTAC 95059 || ||||||||| | ||||| |||||||| || ||| | || |||| | ||| | Sbjct 50383 TTCCAGTTCGACATGTGGGGCGTGAAGCCTTCCTCCCTGCATGATTGGGCGGACCTCAAG 50442 Query 95060 GCGCTGATGTTATCAAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGG 95119 | || || || | || |||||| ||| ||||| |||| |||||||| || | Sbjct 50443 GAGC-GA-GTGGCCCGCCATGGTGTGCGCAACAGCCTGCTGCTGGCGCCCATGCCTACCG 50500 Query 95120 CCTCCACGGCGCAGATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGT 95179 ||||||| || |||||||| |||||||||||| |||| ||| |||| |||| | | Sbjct 50501 CCTCCACCGCACAGATCCTGGGCAACAACGAGAGCATCGAGGCCTACACCAGCAACATCT 50560 Query 95180 ACAACAGGCGGGTGCTCGCCGGGGAATTCC 95209 ||| | ||||| ||| ||| ||||||| Sbjct 50561 ACACACGTCGGGTCCTCAGCGGCGAATTCC 50590 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/133 (75%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 94480 CAGGTGGAGACGGGTACGCCCTACATCTTGTTCAAGGACTC-TGTCAACGCCAAGTCCAA 94538 ||||||||||| || || |||||||| ||| ||||||| | ||| ||| |||| ||| Sbjct 47531 CAGGTGGAGACAGGAACCCCCTACATGCTGTACAAGGACGCGTGT-AACCGCAAGAGCAA 47589 Query 94539 CCAGCAGCACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATAC 94598 || ||| | || || ||||| |||| || || ||||| || ||||| ||||| | Sbjct 47590 TCAACAGAATCTAGGCACTATCAAATGCTCCAACCTCTGCACAGAAATTGTTGAGTACTC 47649 Query 94599 TTCTCCGGACGAG 94611 |||||| |||||| Sbjct 47650 TTCTCCTGACGAG 47662 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/133 (75%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 94480 CAGGTGGAGACGGGTACGCCCTACATCTTGTTCAAGGACTC-TGTCAACGCCAAGTCCAA 94538 ||||||||||| || || |||||||| ||| ||||||| | ||| ||| |||| ||| Sbjct 89453 CAGGTGGAGACAGGAACCCCCTACATGCTGTACAAGGACGCGTGT-AACCGCAAGAGCAA 89511 Query 94539 CCAGCAGCACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATAC 94598 || ||| | || || ||||| |||| || || ||||| || ||||| ||||| | Sbjct 89512 TCAACAGAATCTAGGCACTATCAAATGCTCCAACCTCTGCACAGAAATTGTTGAGTACTC 89571 Query 94599 TTCTCCGGACGAG 94611 |||||| |||||| Sbjct 89572 TTCTCCTGACGAG 89584 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/152 (74%), Gaps = 4/152 (3%) Strand=Plus/Plus Query 95002 TTTCAGTTCGACCTCTGGGGTGTGAAGCCCTCGGGTCTGTACGACTGGGAAG--CTCTAC 95059 || ||||||||| | ||||| |||||||| || ||| ||||||||| | ||| | Sbjct 92588 TTCCAGTTCGACATGTGGGGCGTGAAGCCTTCCTCCCTGCACGACTGGGCGGACCTCAAG 92647 Query 95060 GCGCTGATGTTATCAAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGG 95119 | || || || | || |||||| ||| ||||| |||| |||||||| || | Sbjct 92648 GAGC-GA-GTGGCCCGCCATGGTGTGCGCAACAGCCTGCTGCTGGCGCCCATGCCTACCG 92705 Query 95120 CCTCCACGGCGCAGATCCTTGGCAACAACGAG 95151 ||||||| || |||||||| |||||||||||| Sbjct 92706 CCTCCACCGCACAGATCCTGGGCAACAACGAG 92737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488683279052200