Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parhyale_20hawaiensis_20[genbank_20GCA_5F001587735.1_202016-03-11] 976,695 sequences; 4,023,757,376 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq64647 96.9 4e-15 seq941051 95.1 1e-14 seq66313 95.1 1e-14 seq32741 87.8 2e-12 seq3070 87.8 2e-12 >seq64647 Length=8232 Score = 96.9 bits (106), Expect = 4e-15 Identities = 239/362 (66%), Gaps = 12/362 (3%) Strand=Plus/Minus Query 175748 CCTGTGCCAATACCTTCGGTGCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGAAG 175807 || |||||||| || |||| ||| || || ||||||||||| | |||| || | Sbjct 8184 CCAGTGCCAATGCCCTCGGCGCCATTGACAAGAACCATTGGGATGACAGGCACGTAATAC 8125 Query 175808 TCTGGTTCAATCGCACGCCCATCATCGTCCAAATAGTTGAGCACGGGGTCATCCCTCGGA 175867 || || || || | || |||| |||||||||||| | |||| ||| ||| Sbjct 8124 TCGGGCTCGATTTTTTGATTGTCTTCGTTCAAATAGTTGAGAAGAGGGTTATCTTGAGGA 8065 Query 175868 TCAAAGATTTTACGAGCATCCTTGGTGAGTTTTGTGAAGATGTACCTCGTTTGAGA---C 175924 | || || | |||| | || || ||||| ||||| | |||| | Sbjct 8064 TGGAAAATGTGGTGAGCGAGAGGAGACAGCTTGGTGAAAATGTAAC------GAGAACTC 8011 Query 175925 GCA---TCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTG 175981 ||| ||||| || |||||||||||||| || || |||||| |||| || | ||| Sbjct 8010 GCAGAGTCTTTTCCGCCCATGAGACGCGTACCGAACTGACCAATGGGCTGCAGAACGTTG 7951 Query 175982 ATATTGTTTGAGCCCATATAGTCATTCGCCAACTTGACAATCGTATCCGCGAGGGAGACT 176041 || ||||| ||||| | ||| | |||| |||||||| || | |||||| ||| Sbjct 7950 ATGTTGTTGGAGCCAACGAAGTTCTGGGCCAGGTTGACAATAGTGGACATGAGGGACACT 7891 Query 176042 TCACCGTGATGGTAGGCCGACTTGTCCGCCACATACGCCGCCAACTGCGCCACCTTCATC 176101 |||||||| || ||||| | | || || | |||||| ||| ||||| |||| | Sbjct 7890 TCACCGTGGTGATAGGCGGTGTGTTCTGCAATGCTGCCCGCCAGCTGAGCCACTTTCACC 7831 Query 176102 TC 176103 || Sbjct 7830 TC 7829 >seq941051 Length=452 Score = 95.1 bits (104), Expect = 1e-14 Identities = 79/97 (81%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 176828 AGAGGGAACACACCGTAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTC 176887 |||||||| || ||||| | ||||||||||| ||| ||||| || ||||| |||||| Sbjct 31 AGAGGGAAGACTCCGTATTTGTCACGACCAACAACACCAAGACCTGCTACTGCCAGGGTC 90 Query 176888 TTCGCGGAATCACCCTCCGTCACGATGAGCGTACACT 176924 || || || || ||||| |||| |||||||||||||| Sbjct 91 TTGGCTGAGTCTCCCTCTGTCAAGATGAGCGTACACT 127 >seq66313 Length=14204 Score = 95.1 bits (104), Expect = 1e-14 Identities = 79/97 (81%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 176828 AGAGGGAACACACCGTAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTC 176887 |||||||| || ||||| | ||||||||||| ||| ||||| || ||||| |||||| Sbjct 13768 AGAGGGAAGACTCCGTATTTGTCACGACCAACAACACCAAGACCTGCTACTGCCAGGGTC 13827 Query 176888 TTCGCGGAATCACCCTCCGTCACGATGAGCGTACACT 176924 || || || || ||||| |||| |||||||||||||| Sbjct 13828 TTGGCTGAGTCTCCCTCAGTCAAGATGAGCGTACACT 13864 >seq32741 Length=53758 Score = 87.8 bits (96), Expect = 2e-12 Identities = 125/176 (71%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 175928 TCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGATATTG 175987 ||||| || |||||||||||||| || || |||||| |||| || | ||||| ||| Sbjct 39099 TCTTTTCCGCCCATGAGACGCGTACCGAACTGACCAATGGGCTGCAGAACGTTGATGTTG 39158 Query 175988 TTTGAGCCCATATAGTCATTCGCCAACTTGACAATCGTATCCGCGAGGGAGACTTCACCG 176047 || ||||| | ||| | |||| |||||||| ||| | ||||| ||||||||| Sbjct 39159 TTGGAGCCAACGAAGTTCTGGGCCAGGTTGACAATAGTAGACATAAGGGACACTTCACCG 39218 Query 176048 TGATGGTAGGCCGACTTGTCCGCCACATACGCCGCCAACTGCGCCACCTTCATCTC 176103 || || ||||| | | || || | |||||| ||| ||||| |||| ||| Sbjct 39219 TGGTGATAGGCGGTGTGTTCTGCAATGCTGCCCGCCAGCTGAGCCACTTTCACCTC 39274 >seq3070 Length=111036 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 ||||||||| | ||||| | ||| | || ||| ||||| |||| ||| || || |||||| Sbjct 50561 TAGATGTTGCTGGTGTAGGCCTCGATGCTCTCGTTGTTGCCCAGGATCTGTGCGGTGGAG 50502 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACC 116003 || || |||||||| |||| || ||||||||||| | ||| Sbjct 50501 GCGGTAGGCATGGGCGCCAGCAGCAGGCTGTTGCGCACACC 50461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 606017082316200