Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parhyale_20hawaiensis_20[genbank_20GCA_5F001587735.1_202016-03-11] 976,695 sequences; 4,023,757,376 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq3070 96.9 5e-15 seq7011 91.5 2e-13 >seq3070 Length=111036 Score = 96.9 bits (106), Expect = 5e-15 Identities = 152/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 204196 CTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGC 204255 ||| || || ||| || |||| || ||| | | |||| ||||| | | |||| Sbjct 50592 CTGGAATTCGCCGCTGAGGACCCGACGTGTGTAGATGTTGCTGGTGTAGGCCTCGATGCT 50533 Query 204256 CTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGA 204315 |||||||||||| | ||||| |||||| ||| || |||||||| ||||| |||||| Sbjct 50532 CTCGTTGTTGCCCAGGATCTGTGCGGTGGAGGCGGTAGGCATGGGCGCCAGCAGCAGGCT 50473 Query 204316 GTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGT----CCAGTCGTGCATCG 204371 |||||||||||| || || | || ||| || ||||| ||| || |||| | Sbjct 50472 GTTGCGCACACC--ATGGCGGGCCACT-CGC-TCCTTGAGGTCCGCCCAATCATGCAGGG 50417 Query 204372 CACTGGGTTTCACGCCCCACATGTCGAACTGAAA 204405 || ||||||||||||||||||||||| || Sbjct 50416 AGGAAGGCTTCACGCCCCACATGTCGAACTGGAA 50383 Score = 96.9 bits (106), Expect = 5e-15 Identities = 116/154 (75%), Gaps = 8/154 (5%) Strand=Plus/Minus Query 204256 CTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGA 204315 |||||||||||| | ||||| |||||| ||| || |||||||| ||||| |||||| Sbjct 92737 CTCGTTGTTGCCCAGGATCTGTGCGGTGGAGGCGGTAGGCATGGGCGCCAGCAGCAGGCT 92678 Query 204316 GTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGT----CCAGTCGTGCATCG 204371 |||||||||||| || || | || ||| || ||||| ||||||||||| | Sbjct 92677 GTTGCGCACACC--ATGGCGGGCCACT-CGC-TCCTTGAGGTCCGCCCAGTCGTGCAGGG 92622 Query 204372 CACTGGGTTTCACGCCCCACATGTCGAACTGAAA 204405 || ||||||||||||||||||||||| || Sbjct 92621 AGGAAGGCTTCACGCCCCACATGTCGAACTGGAA 92588 >seq7011 Length=120798 Score = 91.5 bits (100), Expect = 2e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 159920 AGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATG 159979 ||||| ||||||||| ||| || ||||||||||| ||||| | ||||||| | | | Sbjct 27055 AGGCAGGCAAAGTCGGTGTGGAGCCCCTCGTCCCGGGAGATAAGCTCGTTGCTGAAGGTC 26996 Query 159980 AGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAA 160039 ||||| ||||| | || ||| || ||||| || |||| || || | ||| ||| Sbjct 26995 AGGCCGGGCATCAGGCCGCGCTTCTTCAGCCAGAAGATGGAGGCGAAGGACCCGGAGAAA 26936 Query 160040 AAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTC 160077 ||||| ||||| || || ||||| || | || || ||| Sbjct 26935 AAGATTCCCTCAACTGCGGCAAAGGCGATGATCCGCTC 26898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 785447398649200