Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parhyale_20hawaiensis_20[genbank_20GCA_5F001587735.1_202016-03-11] 976,695 sequences; 4,023,757,376 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq6977 125 8e-24 >seq6977 Length=186913 Score = 125 bits (138), Expect = 8e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||||| | ||||| ||||| |||| || ||||||||||||||||||||| || Sbjct 62766 CCTCCTCGCAGACGCAGCACCAAGTGCAGGGTGGACTCCTTTTGGATATTGTAGTCTGAC 62707 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | ||| || | || || ||||||||||||||||| || | |||||||| |||| || Sbjct 62706 AAAGTACGACCATCTTCAAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGATCGGGGGGA 62647 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | ||||| ||| |||||| ||| | | | | ||||| | ||| || Sbjct 62646 ATACCTTCCTTATCCTGGATCTTTGCCTTTACATTTTCTATGGTGTCTGAAGCTTCGACT 62587 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | |||||||| ||||| || || ||||| || ||||||||||| Sbjct 62586 TCGAGGGTGATGGTCTTGCCAGTGAGTGTTTTTACGAAGATTTGCAT 62540 Score = 109 bits (120), Expect = 6e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||| ||||| | ||| || || ||||||||||| || || || || || |||| || Sbjct 60952 CACAAGATGGAGGGTAGATTCTTTCTGGATATTGTAATCAGAGAGGGTACGTCCGTCCTC 60893 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 || |||||||| || || || | ||||||||||||| || | || ||||||||| Sbjct 60892 CAGTTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCGGGGGGAATGCCTTCCTTGTCCTG 60833 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 |||||| ||| | || | | ||||| | ||| || || | ||||||||| || Sbjct 60832 GATCTTAGCCTTCACGTTCTCAATGGTGTCAGAGGCTTCAACTTCGAGCGTGATGGTCTT 60773 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| || || ||||| || ||||| ||||| Sbjct 60772 GCCAGTTAGGGTTTTCACGAAGATCTGCAT 60743 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||||| | ||||| ||||| |||| || ||||||||||||||||||||| || Sbjct 61881 CCTCCTCGCAGACGCAGCACCAAGTGCAGGGTGGACTCCTTTTGGATATTGTAGTCTGAC 61822 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | ||| || | || || ||||||||||||||||| || | ||||| ||||||| || Sbjct 61821 AAAGTACGACCATCTTCAAGCTGCTTGCCGGCGAAGATAAGACGCTGTTGGTCGGGGGGA 61762 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | ||||| ||| |||||| ||| | | | | ||||| | || || Sbjct 61761 ATACCTTCCTTATCCTGGATCTTTGCCTTCACGTTTTCAATGGTGTCCGAAGCCTCGACT 61702 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| ||||| || || || || || || || || || |||||||| Sbjct 61701 TCCAGGGTGATTGTCTTTCCGGTGAGGGTCTTCACGAAAATTTGCAT 61655 Score = 105 bits (116), Expect = 7e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 || || ||||||||||| || || || ||||| | || || ||||| ||||| || || Sbjct 62958 TCTTTCTGGATATTGTAATCAGAGAGGGTGCGGCCATCTTCCAGCTGTTTGCCAGCAAAG 62899 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | ||||||||||||| || | || ||||||||| |||||| ||| | || Sbjct 62898 ATGAGACGCTGCTGGTCGGGGGGAATGCCTTCCTTGTCCTGGATCTTAGCCTTCACGTTC 62839 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | ||||| | ||| || || | |||||||| ||||| ||||| |||||||| Sbjct 62838 TCAATGGTGTCCGAGGCTTCGACTTCGAGGGTGATGGTCTTGCCAGTCAGGGTTTTAACG 62779 Query 46583 AAGATTTGCAT 46593 || || ||||| Sbjct 62778 AAAATCTGCAT 62768 Score = 93.3 bits (102), Expect = 5e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| || |||||||| || || |||||||| |||| || | ||||||||||| || Sbjct 61617 TCCTTCTGAATATTGTAATCAGACAGAGTGCGACCGTCTTCCAATTGCTTGCCGGCAAAA 61558 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | ||||||||||||| || | | ||||||||| |||||| ||| | | Sbjct 61557 ATAAGACGCTGCTGGTCGGGAGGGATTCCTTCCTTGTCCTGGATCTTTGCCTTCACATTT 61498 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | ||||| | || || |||| || || || ||||| || || || ||||| Sbjct 61497 TCAATGGTGTCCGAAGCCTCTACTTCCAGGGTAATAGTCTTGCCGGTGAGGGTCTTAACG 61438 Query 46583 AAGATTTGCAT 46593 || |||||||| Sbjct 61437 AAAATTTGCAT 61427 Score = 93.3 bits (102), Expect = 5e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || ||||| | ||| || ||||| ||||| ||||| ||||||||||| |||| || Sbjct 62520 ACAAGATGGAGGGTAGATTCTTTTTGAATATTATAGTCCGATAGAGTGCGGCCGTCTTCC 62461 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 | |||||| |||||||| || | || || ||||||| || | || ||||||||| Sbjct 62460 AACTGCTTACCGGCGAAAATAAGACGTTGTTGGTCGGGGGGAATGCCTTCCTTGTCCTGA 62401 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 ||||| |||| | | | || || | ||| || || | |||||||| ||| Sbjct 62400 ATCTTTGCTTTGACGTTTTCGATGGTATCCGAGGCTTCGACTTCGAGGGTGATGGTCTTG 62341 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || || || || || |||||||| Sbjct 62340 CCAGTGAGGGTCTTGACGAAAATTTGCAT 62312 Score = 91.5 bits (100), Expect = 2e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| |||| ||| | || |||||| |||||||||||||| || || ||||| | Sbjct 63210 CGCAGAACCAAATGGAGAGTGGACTCCTTCTGGATATTGTAGTCAGAAAGGGTGCGGCCA 63151 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||| |||||||| || || | ||||||||||||| || | | ||||| Sbjct 63150 TCTTCCAGCTGTTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGGGGAATACCTTCCTTA 63091 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| |||||| ||| | | | | || || | || || || | ||||| Sbjct 63090 TCCTGGATCTTTGCCTTCACATTTTCAATAGTATCCGAGGCCTCGACCTCAAGGGTGATT 63031 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||||||| || || || || || ||||| ||||| Sbjct 63030 GTTTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 62996 Score = 89.7 bits (98), Expect = 6e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| |||| | ||||| ||||| || | || |||||||| ||||||||||| | Sbjct 61427 TGCCGCCTCGAAGACGCAGCACCAAGTGAAGAGTGGATTCCTTTTGAATATTGTAGTCAG 61368 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || || || |||| || | ||| ||||| || || || | ||||||||||| | | Sbjct 61367 ACAGGGTACGACCGTCTTCCAACTGTTTGCCAGCAAAGATAAGACGCTGCTGGTCAGGAG 61308 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || ||||| || || || ||| | || | | ||||| | ||| | Sbjct 61307 GAATGCCTTCCTTATCTTGAATTTTAGCCTTTACATTCTCAATGGTGTCTGAAGCTTCGA 61248 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | |||| ||||| || || || || || ||||||||||| || ||||| Sbjct 61247 CTTCCAAGGTGATTGTCTTACCGGTTAGAGTTTTAACAAAAATCTGCAT 61199 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||| || || | ||| |||||||||||||||||| || || || || || | || || Sbjct 62065 CACAAGGTGGAGAGTAGACTCCTTTTGGATATTGTAATCAGAGAGGGTACGACCATCTTC 62006 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 ||||| ||||| || || || | ||||||||||||| || | || ||||||||| Sbjct 62005 CAGCTGTTTGCCAGCAAAGATGAGACGCTGCTGGTCGGGGGGAATGCCTTCCTTGTCCTG 61946 Query 46504 GATCTT 46509 |||||| Sbjct 61945 GATCTT 61940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 558337581011400