Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parhyale_20hawaiensis_20[genbank_20GCA_5F001587735.1_202016-03-11] 976,695 sequences; 4,023,757,376 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq6977 123 2e-23 seq23011 84.2 2e-11 >seq6977 Length=186913 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 |||||| | || |||| |||||| || || ||| || |||||||||||||| ||||| Sbjct 61426 GCCGCCTCGAAGACGCAGCACCAAGTGAAGAGTGGATTCCTTTTGAATATTGTAGTCAGA 61367 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | ||| |||| |||||||| || || ||||| || || ||||| || || | || Sbjct 61366 CAGGGTACGACCGTCTTCCAACTGTTTGCCAGCAAAGATAAGACGCTGCTGGTCAGGAGG 61307 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 || ||| ||||| || ||| || |||||| | | | ||||| || || || Sbjct 61306 AATGCCTTCCTTATCTTGAATTTTAGCCTTTACATTCTCAATGGTGTCTGAAGCTTCGAC 61247 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || || || || || | |||||| |||||||||||||| Sbjct 61246 TTCCAAGGTGATTGTCTTACCGGTTAGAGTTTTAACAAAAATCTGCAT 61199 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 48557 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTC 48616 |||||| || || || ||||||||||| ||||| || || | | || |||| || Sbjct 62293 CACCAAGTGAAGGGTCGATTCTTTTTGAATGTTGTAGTCTGACAAGGTGCGGCCGTCTTC 62234 Query 48617 CAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCT 48676 | |||||||||||| || ||||| |||||||| || | ||||| ||| || ||||| Sbjct 62233 AAGCTGCTTACCGGCGAAGATCAGACGCTGTTGGTCGGGGGGAATGCCTTCTTTGTCCTG 62174 Query 48677 AATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTT 48736 ||| || || ||| | | | || || || ||||| || | |||||||| || Sbjct 62173 AATTTTAGCCTTCACATTCTCAATCGTATCCGAGGCTTCCACTTCAAGAGTAATCGTCTT 62114 Query 48737 TCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||| ||||| || ||||||||||| Sbjct 62113 GCCGGTCAGGGTTTTCACGAAAATCTGCAT 62084 Score = 102 bits (112), Expect = 6e-17 Identities = 92/116 (79%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 |||||||||||||| || || |||||| | || |||| ||||||||||||||||| || Sbjct 62502 TCTTTTTGAATATTATAGTCCGATAGAGTGCGGCCGTCTTCCAACTGCTTACCGGCGAAA 62443 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTAC 48691 || || || ||||| || | ||||| ||| |||||||| ||||||| ||| || Sbjct 62442 ATAAGACGTTGTTGGTCGGGGGGAATGCCTTCCTTGTCCTGAATCTTTGCTTTGAC 62387 Score = 98.7 bits (108), Expect = 7e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622 ||| || ||| || || ||||||||||||||||| ||| | ||| |||| ||||| || Sbjct 61630 ATGGAGGGTGGATTCCTTCTGAATATTGTAATCAGACAGAGTGCGACCGTCTTCCAATTG 61571 Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682 ||| |||||||| || || ||||| || || | || | || |||||||| ||||| Sbjct 61570 CTTGCCGGCAAAAATAAGACGCTGCTGGTCGGGAGGGATTCCTTCCTTGTCCTGGATCTT 61511 Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742 | || ||| | | | || || ||||| || |||| ||||| || || || || Sbjct 61510 TGCCTTCACATTTTCAATGGTGTCCGAAGCCTCTACTTCCAGGGTAATAGTCTTGCCGGT 61451 Query 48743 CAAAGTTTTTACAAAAATCTGCAT 48766 | || || || ||||| ||||| Sbjct 61450 GAGGGTCTTAACGAAAATTTGCAT 61427 >seq23011 Length=82770 Score = 84.2 bits (92), Expect = 2e-11 Identities = 116/161 (72%), Gaps = 1/161 (1%) Strand=Plus/Plus Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTG 48671 || || | |||||| || ||||| || |||||||||||||| | ||||| || |||||| Sbjct 77568 TCTTCGAGCTGCTTTCCTGCAAAGATAAGTCGCTGTTGATCAGGGGGAATACCTTCCTTG 77627 Query 48672 TCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATC 48731 || ||||| ||| ||| | | | || || ||||||||||| | || || Sbjct 77628 TCTTGGATCTTGGCTTTCACATTTTCAATGGTATCAGAAGCCTCCACCTCAAGGGTGATG 77687 Query 48732 GTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTGTG 48772 || || ||||| | ||||| || || ||||||||| |||| Sbjct 77688 GTCTTCCCCGTGAGTGTTTTCACGAAGATCTGCATC-TGTG 77727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 376403120587485