Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Parhyale_20hawaiensis_20[genbank_20GCA_5F001587735.1_202016-03-11]
976,695 sequences; 4,023,757,376 total letters
Query= NC_021246.1
Length=281182
Score E
Sequences producing significant alignments: (Bits) Value
seq4196 134 2e-26
seq23011 102 1e-16
seq6977 98.7 2e-15
>seq4196
Length=56364
Score = 134 bits (148), Expect = 2e-26
Identities = 119/149 (80%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274
|| || || |||||||| | |||||||| ||||| || || || ||||||||||| |||
Sbjct 9838 TGCTTGCCAGCAAAAATAAGCCTCTGTTGGTCAGGTGGAATACCCTCTTTATCTTGAATT 9779
Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334
|||| ||| | |||| |||||||| |||| |||||||||||| || || || |||||
Sbjct 9778 TTGGATTTGACATTTTCGATAGTATCTGAAGCCTCAACTTCTAGGGTAATGGTCTTACCC 9719
Query 193335 GTTAGCGTTTTTACAAATATTTGCATTTT 193363
|| || ||||| |||||||| ||||| ||
Sbjct 9718 GTGAGGGTTTTCACAAATATCTGCATGTT 9690
>seq23011
Length=82770
Score = 102 bits (112), Expect = 1e-16
Identities = 110/146 (75%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274
|| ||||| ||||| || | || |||||||||||| || || ||||| || ||||| ||
Sbjct 77577 TGCTTTCCTGCAAAGATAAGTCGCTGTTGATCAGGGGGAATACCTTCCTTGTCTTGGATC 77636
Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334
|||| ||| | |||| ||| ||||| |||| ||| || || || || || || || ||
Sbjct 77637 TTGGCTTTCACATTTTCAATGGTATCAGAAGCCTCCACCTCAAGGGTGATGGTCTTCCCC 77696
Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360
|| || ||||| || || || |||||
Sbjct 77697 GTGAGTGTTTTCACGAAGATCTGCAT 77722
>seq6977
Length=186913
Score = 98.7 bits (108), Expect = 2e-15
Identities = 164/237 (69%), Gaps = 0/237 (0%)
Strand=Plus/Minus
Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183
||||| |||||||||||||| || || |||| || | || | ||||| ||| ||
Sbjct 62320 AATTTGCATACCACCTCTCAAACGTAGCACCAAGTGAAGGGTCGATTCTTTTTGAATGTT 62261
Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243
||||| || || || | || || | || || ||||| || || | | ||||||
Sbjct 62260 GTAGTCTGACAAGGTGCGGCCGTCTTCAAGCTGCTTACCGGCGAAGATCAGACGCTGTTG 62201
Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303
|| || || || |||||||| || || ||||| | || | ||| ||| ||||| ||
Sbjct 62200 GTCGGGGGGAATGCCTTCTTTGTCCTGAATTTTAGCCTTCACATTCTCAATCGTATCCGA 62141
Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
| || ||||| ||||| || || || || || || ||||| || || || |||||
Sbjct 62140 GGCTTCCACTTCAAGAGTAATCGTCTTGCCGGTCAGGGTTTTCACGAAAATCTGCAT 62084
Score = 96.9 bits (106), Expect = 6e-15
Identities = 131/183 (72%), Gaps = 0/183 (0%)
Strand=Plus/Minus
Query 193178 AATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCT 193237
|||||| || || || | || | | || || ||||| || ||||||||||| | |
Sbjct 61609 AATATTGTAATCAGACAGAGTGCGACCGTCTTCCAATTGCTTGCCGGCAAAAATAAGACG 61550
Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297
||| || || ||||| |||||||| || || || || || | || | |||| ||| ||
Sbjct 61549 CTGCTGGTCGGGAGGGATTCCTTCCTTGTCCTGGATCTTTGCCTTCACATTTTCAATGGT 61490
Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357
|| |||| ||| ||||| || || ||||| || || || || || || || || |||||
Sbjct 61489 GTCCGAAGCCTCTACTTCCAGGGTAATAGTCTTGCCGGTGAGGGTCTTAACGAAAATTTG 61430
Query 193358 CAT 193360
|||
Sbjct 61429 CAT 61427
Score = 84.2 bits (92), Expect = 4e-11
Identities = 160/236 (68%), Gaps = 0/236 (0%)
Strand=Plus/Minus
Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184
|||| |||||||| | | | || || ||||| | |||| ||||| |||||||
Sbjct 62547 ATTTGCATACCACCACGAAGCCTGAGGACAAGATGGAGGGTAGATTCTTTTTGAATATTA 62488
Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244
||||| |||| || | || || || || || ||||| ||||| | | |||||
Sbjct 62487 TAGTCCGATAGAGTGCGGCCGTCTTCCAACTGCTTACCGGCGAAAATAAGACGTTGTTGG 62428
Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304
|| || || || ||||| || || || || || | ||| | ||| || ||||| ||
Sbjct 62427 TCGGGGGGAATGCCTTCCTTGTCCTGAATCTTTGCTTTGACGTTTTCGATGGTATCCGAG 62368
Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
| || ||||| || || || || || || || || || || || || ||||||||
Sbjct 62367 GCTTCGACTTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAAATTTGCAT 62312
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 888670800572400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |