Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parhyale_20hawaiensis_20[genbank_20GCA_5F001587735.1_202016-03-11] 976,695 sequences; 4,023,757,376 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq4196 134 2e-26 seq23011 102 1e-16 seq6977 98.7 2e-15 >seq4196 Length=56364 Score = 134 bits (148), Expect = 2e-26 Identities = 119/149 (80%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || || || |||||||| | |||||||| ||||| || || || ||||||||||| ||| Sbjct 9838 TGCTTGCCAGCAAAAATAAGCCTCTGTTGGTCAGGTGGAATACCCTCTTTATCTTGAATT 9779 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 |||| ||| | |||| |||||||| |||| |||||||||||| || || || ||||| Sbjct 9778 TTGGATTTGACATTTTCGATAGTATCTGAAGCCTCAACTTCTAGGGTAATGGTCTTACCC 9719 Query 193335 GTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || ||||| |||||||| ||||| || Sbjct 9718 GTGAGGGTTTTCACAAATATCTGCATGTT 9690 >seq23011 Length=82770 Score = 102 bits (112), Expect = 1e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || ||||| ||||| || | || |||||||||||| || || ||||| || ||||| || Sbjct 77577 TGCTTTCCTGCAAAGATAAGTCGCTGTTGATCAGGGGGAATACCTTCCTTGTCTTGGATC 77636 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 |||| ||| | |||| ||| ||||| |||| ||| || || || || || || || || Sbjct 77637 TTGGCTTTCACATTTTCAATGGTATCAGAAGCCTCCACCTCAAGGGTGATGGTCTTCCCC 77696 Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| || || || ||||| Sbjct 77697 GTGAGTGTTTTCACGAAGATCTGCAT 77722 >seq6977 Length=186913 Score = 98.7 bits (108), Expect = 2e-15 Identities = 164/237 (69%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| |||||||||||||| || || |||| || | || | ||||| ||| || Sbjct 62320 AATTTGCATACCACCTCTCAAACGTAGCACCAAGTGAAGGGTCGATTCTTTTTGAATGTT 62261 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||||| || || || | || || | || || ||||| || || | | |||||| Sbjct 62260 GTAGTCTGACAAGGTGCGGCCGTCTTCAAGCTGCTTACCGGCGAAGATCAGACGCTGTTG 62201 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || || || || |||||||| || || ||||| | || | ||| ||| ||||| || Sbjct 62200 GTCGGGGGGAATGCCTTCTTTGTCCTGAATTTTAGCCTTCACATTCTCAATCGTATCCGA 62141 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | || ||||| ||||| || || || || || || ||||| || || || ||||| Sbjct 62140 GGCTTCCACTTCAAGAGTAATCGTCTTGCCGGTCAGGGTTTTCACGAAAATCTGCAT 62084 Score = 96.9 bits (106), Expect = 6e-15 Identities = 131/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 193178 AATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCT 193237 |||||| || || || | || | | || || ||||| || ||||||||||| | | Sbjct 61609 AATATTGTAATCAGACAGAGTGCGACCGTCTTCCAATTGCTTGCCGGCAAAAATAAGACG 61550 Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 ||| || || ||||| |||||||| || || || || || | || | |||| ||| || Sbjct 61549 CTGCTGGTCGGGAGGGATTCCTTCCTTGTCCTGGATCTTTGCCTTCACATTTTCAATGGT 61490 Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357 || |||| ||| ||||| || || ||||| || || || || || || || || ||||| Sbjct 61489 GTCCGAAGCCTCTACTTCCAGGGTAATAGTCTTGCCGGTGAGGGTCTTAACGAAAATTTG 61430 Query 193358 CAT 193360 ||| Sbjct 61429 CAT 61427 Score = 84.2 bits (92), Expect = 4e-11 Identities = 160/236 (68%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||| | | | || || ||||| | |||| ||||| ||||||| Sbjct 62547 ATTTGCATACCACCACGAAGCCTGAGGACAAGATGGAGGGTAGATTCTTTTTGAATATTA 62488 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| |||| || | || || || || || ||||| ||||| | | ||||| Sbjct 62487 TAGTCCGATAGAGTGCGGCCGTCTTCCAACTGCTTACCGGCGAAAATAAGACGTTGTTGG 62428 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || ||||| || || || || || | ||| | ||| || ||||| || Sbjct 62427 TCGGGGGGAATGCCTTCCTTGTCCTGAATCTTTGCTTTGACGTTTTCGATGGTATCCGAG 62368 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | || ||||| || || || || || || || || || || || || |||||||| Sbjct 62367 GCTTCGACTTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAAATTTGCAT 62312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 888670800572400