Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parhyale_20hawaiensis_20[genbank_20GCA_5F001587735.1_202016-03-11] 976,695 sequences; 4,023,757,376 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq4196 129 1e-24 seq6977 109 1e-18 >seq4196 Length=56364 Score = 129 bits (142), Expect = 1e-24 Identities = 118/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 || || ||||||||||| | ||||||||||||||||| || || ||||||||||| ||| Sbjct 9838 TGCTTGCCAGCAAAAATAAGCCTCTGTTGGTCAGGTGGAATACCCTCTTTATCTTGAATT 9779 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 || ||| ||||| ||||||||||| | || |||||||| |||||||| ||||| Sbjct 9778 TTGGATTTGACATTTTCGATAGTATCTGAAGCCTCAACTTCTAGGGTAATGGTCTTACCC 9719 Query 172044 GTTAATGTTTTAATGAATATCTGCATTTT 172072 || | ||||| | ||||||||||| || Sbjct 9718 GTGAGGGTTTTCACAAATATCTGCATGTT 9690 >seq6977 Length=186913 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | |||| || || || | || | ||||| ||| || || ||| Sbjct 62313 ATACCACCTCTCAAACGTAGCACCAAGTGAAGGGTCGATTCTTTTTGAATGTTGTAGTCT 62254 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | || |||| || | || ||||| || || || | | ||||||||| || Sbjct 62253 GACAAGGTGCGGCCGTCTTCAAGCTGCTTACCGGCGAAGATCAGACGCTGTTGGTCGGGG 62194 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| || || |||||| || ||||| || ||||| || | ||| Sbjct 62193 GGAATGCCTTCTTTGTCCTGAATTTTAGCCTTCACATTCTCAATCGTATCCGAGGCTTCC 62134 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| |||||||| || || || || | ||||| | ||| |||||||| Sbjct 62133 ACTTCAAGAGTAATCGTCTTGCCGGTCAGGGTTTTCACGAAAATCTGCAT 62084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 894085477431000