Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Parhyale_20hawaiensis_20[genbank_20GCA_5F001587735.1_202016-03-11] 976,695 sequences; 4,023,757,376 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq6977 111 1e-19 >seq6977 Length=186913 Score = 111 bits (122), Expect = 1e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || ||||||||| | || || || | ||||| ||||||||||||| Sbjct 62540 ATGCAAATCTTCGTAAAAACACTCACTGGCAAGACCATCACCCTCGAAGTCGAAGCTTCA 62599 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || || | ||||| ||| || ||||| || ||||| || ||||||||| Sbjct 62600 GACACCATAGAAAATGTAAAGGCAAAGATCCAGGATAAGGAAGGTATTCCCCCCGATCAG 62659 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGTCAGCGATTACA 25352 || | || || | || |||||| || || ||||||| | | | ||||| || |||| Sbjct 62660 CAGCGTCTTATCTTCGCCGGCAAGCAGCTTGAAGATGGTCGTACTTTGTCA--GACTACA 62717 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 |||| ||||| || |||||| | || || ||| | | || ||||||| Sbjct 62718 ATATCCAAAAGGAGTCCACCCTGCACTTGGTGCTGCGTCTGCGAGGAGG 62766 Score = 98.7 bits (108), Expect = 9e-16 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | || || ||||| | ||||| || |||| || | ||||| |||||| Sbjct 62083 CATGCAGATTTTCGTGAAAACCCTGACCGGCAAGACGATTACTCTTGAAGTGGAAGCCTC 62142 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||||| || ||| | || || |||||| || ||||| || || || ||||| || Sbjct 62143 GGATACGATTGAGAATGTGAAGGCTAAAATTCAGGACAAAGAAGGCATTCCCCCCGACCA 62202 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTAC 25351 || | || || | || ||| || || || ||||| | | | |||||| | ||| Sbjct 62203 ACAGCGTCTGATCTTCGCCGGTAAGCAGCTTGAAGACGGCCGCACCTTGTCAG--ACTAC 62260 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || |||||||||||||| ||| |||| || ||| || | |||||||| || Sbjct 62261 AACATTCAAAAAGAATCGACCCTTCACTTGGTGCTACGTTTGAGAGGTGG 62310 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| ||||| ||||||| || | ||||| | ||||||||||| Sbjct 61199 ATGCAGATTTTTGTTAAAACTCTAACCGGTAAGACAATCACCTTGGAAGTCGAAGCTTCA 61258 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || ||| | ||||| |||||| ||||| || || || || || || ||| Sbjct 61259 GACACCATTGAGAATGTAAAGGCTAAAATTCAAGATAAGGAAGGCATTCCTCCTGACCAG 61318 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGTCAGCGATTACA 25352 || | || || | | |||||||| | ||||| | | | | |||| || |||| Sbjct 61319 CAGCGTCTTATCTTTGCTGGCAAACAGTTGGAAGACGGTCGTACCCTGTC--TGACTACA 61376 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTG 25384 |||||||||| |||||||| |||| || ||| Sbjct 61377 ATATTCAAAAGGAATCCACTCTTCACTTGGTG 61408 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || || || || | ||||| || | ||||| | |||||||| ||| Sbjct 60971 ATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTTGAAGTCGAGGCCTCT 61030 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 |||||||| || | || || || || ||||| || ||||| || ||||| || Sbjct 61031 GATACTATTGAAAATGTGAAGGCTAAGATCCAGGATAAGGAAGGTATTCCCCCCGACCAA 61090 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || | || |||| || |||||| || || ||||||| | | | || |||||| Sbjct 61091 CAGCGTCTTATTTTCGCCGGCAAGCAGCTGGAAGATGGCCGCACACTTTCGGACTACAAT 61150 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || || |||||||||||| ||||| | ||| | ||| || | || || Sbjct 61151 ATCCAGAAAGAATCCACCCTTCATCTCGTGCTCAGACTGCGTGGTGG 61197 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || || | || || || | ||||| |||||||||||||| Sbjct 62312 ATGCAAATTTTCGTCAAGACCCTCACTGGCAAGACCATCACCCTCGAAGTCGAAGCCTCG 62371 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| ||||| | || ||| ||| ||| || || || || || || ||||| || Sbjct 62372 GATACCATCGAAAACGTCAAAGCAAAGATTCAGGACAAGGAAGGCATTCCCCCCGACCAA 62431 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | || |||| || ||| || || | ||||| | | | | | || || ||| Sbjct 62432 CAACGTCTTATTTTCGCCGGTAAGCAGTTGGAAGACGGCCGCACTCTATCGGACTATAAT 62491 Query 25355 ATTCAAAAAGAATCCACCATTCAT 25378 |||||||||||||| ||| | ||| Sbjct 62492 ATTCAAAAAGAATCTACCCTCCAT 62515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 439660381562400